Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   G5C67_RS04105 Genome accession   NZ_CP049089
Coordinates   792038..793876 (-) Length   612 a.a.
NCBI ID   WP_075630414.1    Uniprot ID   -
Organism   Glaesserella parasuis strain vHPS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 787038..798876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C67_RS04080 (G5C67_04050) - 787465..788304 (-) 840 WP_075630413.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  G5C67_RS04085 (G5C67_04055) ampD 788362..788928 (+) 567 WP_010787066.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  G5C67_RS04090 (G5C67_04060) - 788921..789829 (-) 909 WP_021109738.1 lysine exporter LysO family protein -
  G5C67_RS04095 (G5C67_04065) dinB 789973..791043 (+) 1071 WP_035495819.1 DNA polymerase IV -
  G5C67_RS04100 (G5C67_04070) htpX 791149..792000 (+) 852 WP_010787063.1 protease HtpX -
  G5C67_RS04105 (G5C67_04075) uvrC 792038..793876 (-) 1839 WP_075630414.1 excinuclease ABC subunit UvrC Machinery gene
  G5C67_RS04110 (G5C67_04080) pgsA 793972..794520 (-) 549 WP_021111268.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  G5C67_RS04115 (G5C67_04085) modB 794676..795377 (+) 702 WP_075630432.1 molybdate ABC transporter permease subunit -
  G5C67_RS04120 (G5C67_04090) modC 795377..796438 (+) 1062 WP_075630415.1 molybdenum ABC transporter ATP-binding protein ModC -
  G5C67_RS04125 (G5C67_04095) sodA 796657..797277 (+) 621 WP_075621057.1 superoxide dismutase [Mn] -
  G5C67_RS04130 (G5C67_04100) - 797660..798275 (+) 616 Protein_792 IS1595 family transposase -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 69508.58 Da        Isoelectric Point: 8.7716

>NTDB_id=372275 G5C67_RS04105 WP_075630414.1 792038..793876(-) (uvrC) [Glaesserella parasuis strain vHPS7]
MSKFNSKQFLADTPHNPGVYRMYDDKGTIIYVGKAKDLKKRLSSYFRSTLASRKTEALVSQIAHIDTTITHSETEALLLE
HNYIKENQPKYNVLLRDDKSYPYILLTKHQHPRLASFRGSKKIAGEYFGPYPNAGAVRETLNLLQKLFPIRQCEDNYYKN
RSRPCLQYQIGRCLAPCVEGVYSQREYDQQVEYVRLFLQGKDQQVIEHLISKMETAAEDLDFEAAARFRDQIQQVRAVTE
KQFVSNERLDDLDIISIAYQHGIACVHILFVRQGKVLGSRSYFPKVPNHTELAELSDTFIGQFYLQMNQHRTIPHQIIID
HPVSEVEALEKVLSEQTGHKVSITDKVRGEKSRYLALAKTNAMAALTLQLKQDARIQTRYEALQAVLSLPKIARMECFDI
SHTMGEQTVASCVVFDENGPLKSDYRRFNIEGITGGDDYAAMEQALLKRYDKPLPPEKIPDIIFIDGGKGQLNRALETFA
NLKVEWDKSKPLLIGVSKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQHIRDESHNHAISGHRKKRQKAFTESGLEA
IAGVGAKRRHLLLKYLGGMQGVKSATLDEIKSVPGISVSLAEIIFDTLNYSE

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=372275 G5C67_RS04105 WP_075630414.1 792038..793876(-) (uvrC) [Glaesserella parasuis strain vHPS7]
ATGTCAAAATTCAATTCCAAACAATTTCTTGCCGATACTCCACATAACCCTGGTGTTTATCGTATGTATGATGATAAAGG
CACGATCATCTATGTCGGTAAGGCAAAAGATTTAAAAAAGCGTCTATCGAGCTATTTTCGTAGCACTCTTGCCAGCCGAA
AAACTGAAGCCTTAGTATCGCAAATTGCTCATATTGATACCACCATTACCCATTCGGAAACCGAAGCCTTACTGTTGGAA
CACAATTACATTAAGGAAAATCAACCGAAATACAATGTGTTGCTTCGTGACGACAAATCTTACCCTTATATTTTGCTTAC
CAAACACCAGCACCCACGTTTAGCCAGCTTTCGGGGAAGTAAAAAAATCGCAGGGGAATATTTTGGACCTTACCCAAATG
CAGGGGCGGTGCGGGAAACCTTAAATCTGCTACAAAAACTGTTTCCGATCCGCCAGTGTGAAGACAACTACTACAAAAAC
CGTTCTCGCCCTTGTTTACAATATCAAATCGGGCGTTGCCTTGCCCCTTGCGTGGAAGGCGTTTATTCCCAACGAGAATA
CGATCAACAGGTGGAGTATGTTCGCTTATTCTTACAAGGTAAAGATCAGCAAGTGATCGAACATTTGATTAGCAAAATGG
AAACAGCAGCGGAAGATCTGGATTTTGAAGCTGCCGCGCGTTTTCGAGATCAAATTCAGCAGGTGCGAGCGGTCACTGAA
AAGCAATTTGTATCGAACGAACGCTTGGACGATCTCGATATTATTTCGATTGCCTATCAACACGGTATTGCTTGCGTACA
TATTCTGTTTGTACGACAAGGGAAAGTGTTGGGTAGCCGAAGCTATTTCCCCAAAGTGCCGAACCATACCGAACTTGCCG
AATTGAGCGACACTTTTATCGGGCAGTTTTATTTGCAGATGAACCAACATCGCACCATTCCGCACCAAATCATTATCGAT
CACCCCGTGAGCGAAGTGGAAGCCTTAGAAAAGGTATTGTCGGAACAAACAGGACATAAAGTGAGTATTACCGATAAGGT
GCGAGGCGAAAAAAGCCGTTATCTTGCTCTTGCTAAAACCAACGCAATGGCAGCACTGACTTTGCAACTCAAGCAAGATG
CTCGTATCCAAACCCGTTATGAAGCCTTGCAAGCGGTGCTTTCTTTGCCAAAAATTGCAAGAATGGAATGCTTTGATATC
AGTCACACGATGGGCGAACAAACAGTCGCTTCTTGTGTTGTATTTGATGAAAACGGCCCGTTAAAATCTGACTATCGCCG
TTTTAACATTGAAGGTATTACAGGGGGCGATGATTATGCCGCAATGGAACAAGCCCTGCTCAAACGTTACGATAAACCGC
TTCCGCCTGAAAAAATCCCCGATATTATCTTTATTGACGGCGGAAAAGGGCAGTTAAACCGAGCCTTAGAAACCTTTGCC
AATCTCAAAGTGGAATGGGATAAATCCAAACCATTACTTATCGGCGTATCAAAAGGCGTAGAACGCAAGGCAGGGTTAGA
AACCTTGCTGATCAGCAAATGGGACAAGGAAATCCACTTACCGCCCGACAGCCCAGCGTTACATTTAATTCAGCATATCC
GTGATGAATCCCATAACCACGCCATTAGCGGACACCGTAAAAAACGGCAAAAAGCCTTTACCGAAAGCGGTTTAGAGGCA
ATCGCTGGCGTTGGAGCCAAACGCCGCCATTTGTTGCTAAAATATCTCGGTGGTATGCAAGGCGTCAAATCAGCAACACT
TGATGAAATTAAATCGGTTCCTGGAATTTCAGTATCTTTGGCTGAGATTATTTTCGATACCCTAAATTATAGTGAATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(204-236)

GIY-YIG catalytic domain (GIY-YIG)

(17-92)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

37.748

98.693

0.373
  uvrC Streptococcus pneumoniae R6

37.417

98.693

0.369
  uvrC Streptococcus pneumoniae D39

37.417

98.693

0.369

Multiple sequence alignment