Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   G5C67_RS03290 Genome accession   NZ_CP049089
Coordinates   609388..610638 (+) Length   416 a.a.
NCBI ID   WP_075630799.1    Uniprot ID   -
Organism   Glaesserella parasuis strain vHPS7     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 604388..615638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C67_RS03265 (G5C67_03240) rluB 605288..606307 (-) 1020 WP_005711758.1 23S rRNA pseudouridine(2605) synthase RluB -
  G5C67_RS03270 (G5C67_03245) - 606477..607097 (-) 621 WP_005711759.1 L-threonylcarbamoyladenylate synthase -
  G5C67_RS03275 (G5C67_03250) - 607566..608120 (+) 555 WP_075631073.1 SLC13 family permease -
  G5C67_RS03280 (G5C67_03255) - 608310..608699 (-) 390 WP_075630798.1 SufE family protein -
  G5C67_RS03285 (G5C67_03260) clpP 608800..609381 (+) 582 WP_005711766.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  G5C67_RS03290 (G5C67_03265) clpX 609388..610638 (+) 1251 WP_075630799.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  G5C67_RS03295 (G5C67_03270) dapE 610712..611845 (-) 1134 WP_021113185.1 succinyl-diaminopimelate desuccinylase -
  G5C67_RS03300 (G5C67_03275) - 611929..612597 (-) 669 WP_021113181.1 prepilin peptidase -
  G5C67_RS03305 (G5C67_03280) pilC 612594..613790 (-) 1197 WP_021113189.1 type II secretion system F family protein Machinery gene
  G5C67_RS03310 (G5C67_03285) pilB 613783..615168 (-) 1386 WP_021113170.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45731.47 Da        Isoelectric Point: 5.4104

>NTDB_id=372265 G5C67_RS03290 WP_075630799.1 609388..610638(+) (clpX) [Glaesserella parasuis strain vHPS7]
MANFEKEPHCSFCGKRRNEVDALIEGTEGHICNECIEESYALINGTDELLIDANEAESQDVLGNVPTPHEIHAHLDDYVI
GQEHAKKVLSVAVYNHYKRLRNALSDNKESEGVELGKSNILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVG
EDVENVIQKLLMKCDFDKDQAERGIIFIDEIDKITRKSENPSLTRDVSGEGVQQALLKLIEGTIANINPQGGRKHPKQET
IPVDTSKILFICGGAFAGLDKIVEARTNTQGGIGFKAELKKDKARQALTELFKQVEPEDLVKFGLIPELIGRLPVITPLE
ELDEKALINILTEPKNAIIKQYQALFKMEGVELKFTKDALVAIAQKAISRKTGARGLRSIVENLLLDTMYDLPSLKASKV
TVGKNCVEKGEKPKVE

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=372265 G5C67_RS03290 WP_075630799.1 609388..610638(+) (clpX) [Glaesserella parasuis strain vHPS7]
ATGGCAAATTTTGAGAAAGAACCACATTGTAGTTTTTGTGGAAAGCGTCGTAATGAAGTCGATGCGTTAATTGAAGGTAC
AGAAGGACATATTTGTAACGAATGTATTGAAGAGTCTTATGCGTTAATTAATGGAACTGATGAGCTATTGATTGATGCAA
ATGAGGCTGAGAGCCAAGATGTGTTAGGTAATGTGCCTACTCCACATGAAATTCACGCACATTTAGATGATTATGTGATC
GGGCAAGAACACGCTAAAAAGGTGTTGTCGGTTGCGGTTTATAACCACTACAAACGCTTACGCAATGCACTTTCTGACAA
TAAAGAGAGTGAAGGCGTTGAGTTGGGTAAAAGTAACATTTTGCTTATCGGCCCGACAGGAAGTGGTAAAACATTGTTAG
CAGAAACCTTGGCACGCCGTTTAAATGTGCCTTTTGCTGTGGCTGATGCAACAACGCTGACGCAAGCAGGCTATGTGGGT
GAAGATGTTGAAAATGTGATCCAAAAATTGCTGATGAAGTGTGATTTTGATAAAGATCAGGCTGAACGTGGCATTATTTT
TATTGATGAAATCGACAAAATTACCCGTAAATCAGAAAATCCATCATTGACCCGTGATGTATCAGGTGAAGGGGTTCAGC
AGGCATTACTTAAATTGATTGAAGGTACTATCGCGAATATCAATCCACAAGGCGGACGCAAACACCCGAAACAAGAAACA
ATCCCAGTTGATACCTCTAAAATTCTCTTTATCTGTGGCGGTGCATTTGCAGGGCTAGATAAAATTGTCGAAGCTCGAAC
GAATACACAAGGTGGAATTGGCTTTAAAGCAGAATTGAAAAAAGATAAAGCTCGTCAAGCACTCACTGAATTATTCAAAC
AAGTTGAACCTGAAGATTTGGTGAAATTTGGTTTAATTCCAGAGCTAATCGGACGTTTGCCTGTTATCACACCGCTTGAA
GAACTTGATGAGAAAGCACTTATTAACATTTTGACAGAACCGAAAAATGCGATTATCAAGCAGTATCAAGCCTTGTTCAA
AATGGAAGGTGTGGAATTAAAATTCACCAAAGATGCTTTAGTGGCGATTGCTCAAAAAGCGATTTCTCGTAAAACAGGGG
CAAGGGGGCTACGTTCAATCGTGGAAAACTTGCTACTTGACACTATGTATGATTTACCGTCCTTAAAAGCAAGTAAAGTG
ACAGTAGGTAAAAACTGTGTTGAGAAAGGTGAAAAGCCGAAGGTGGAGTAA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(117-316)

ClpX C4-type zinc finger (zf-C4_ClpX)

(9-44)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(322-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

55.718

98.798

0.55
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.412

98.077

0.534

Multiple sequence alignment