Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   G5C67_RS02015 Genome accession   NZ_CP049089
Coordinates   376534..376875 (-) Length   113 a.a.
NCBI ID   WP_021112680.1    Uniprot ID   -
Organism   Glaesserella parasuis strain vHPS7     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 371534..381875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C67_RS01985 (G5C67_01975) - 371710..372492 (-) 783 WP_016527622.1 TatD family hydrolase -
  G5C67_RS01990 (G5C67_01980) - 372506..373003 (-) 498 WP_021112650.1 GNAT family N-acetyltransferase -
  G5C67_RS01995 (G5C67_01985) - 373004..373282 (-) 279 WP_005714674.1 DUF1778 domain-containing protein -
  G5C67_RS02000 (G5C67_01990) epmA 373336..374316 (-) 981 WP_035495957.1 elongation factor P--(R)-beta-lysine ligase -
  G5C67_RS02005 (G5C67_01995) - 374440..375537 (-) 1098 WP_164692056.1 ISAs1 family transposase -
  G5C67_RS02010 (G5C67_02000) - 375671..376434 (+) 764 WP_160428664.1 IS5 family transposase -
  G5C67_RS02015 (G5C67_02005) comEA/comE1 376534..376875 (-) 342 WP_021112680.1 ComEA family DNA-binding protein Machinery gene
  G5C67_RS02020 (G5C67_02010) - 377133..378398 (+) 1266 WP_075630514.1 LysM-like peptidoglycan-binding domain-containing protein -
  G5C67_RS02025 (G5C67_02015) - 378590..378856 (+) 267 WP_234701705.1 MliC family protein -
  G5C67_RS02030 (G5C67_02020) waaF 378865..379917 (+) 1053 WP_160413767.1 lipopolysaccharide heptosyltransferase II -
  G5C67_RS02035 (G5C67_02025) - 380013..380600 (+) 588 WP_035494230.1 FMN-dependent NADH-azoreductase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12447.29 Da        Isoelectric Point: 9.8973

>NTDB_id=372261 G5C67_RS02015 WP_021112680.1 376534..376875(-) (comEA/comE1) [Glaesserella parasuis strain vHPS7]
MKKLSRYTFSLLFGLFSATTFAEEKVTTSTEHTPVVMQQVAATQKVNANVVNINTATASEIQDKLVGIGAKKAQAIVEYR
EKNGKFLNVEQLTEVSGIGKATLEKNRDRIVIE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=372261 G5C67_RS02015 WP_021112680.1 376534..376875(-) (comEA/comE1) [Glaesserella parasuis strain vHPS7]
ATGAAAAAACTTTCTCGTTACACATTCAGTCTTTTATTTGGGCTTTTCTCTGCAACAACATTTGCTGAAGAAAAAGTAAC
TACGTCAACAGAACATACACCGGTAGTGATGCAACAAGTCGCAGCGACACAAAAAGTAAATGCGAATGTTGTAAATATCA
ATACTGCGACAGCCTCAGAAATCCAAGATAAGTTAGTCGGTATTGGAGCGAAAAAGGCTCAGGCAATTGTGGAATATCGT
GAGAAAAACGGTAAGTTTTTAAATGTTGAGCAGCTCACCGAAGTTTCAGGTATCGGGAAAGCGACACTTGAAAAAAACCG
AGATCGTATTGTGATTGAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(46-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

99.115

100

0.991
  comE1/comEA Haemophilus influenzae Rd KW20

59.13

100

0.602