Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   G6P90_RS13755 Genome accession   NZ_CP049081
Coordinates   2829268..2829924 (-) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain p10A     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2824268..2834924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6P90_RS13715 (G6P90_13720) - 2824777..2825037 (+) 261 WP_000488111.1 ogr/Delta-like zinc finger family protein -
  G6P90_RS13720 (G6P90_13725) - 2825229..2825369 (+) 141 WP_000078916.1 Hok/Gef family protein -
  G6P90_RS13725 (G6P90_13730) - 2825559..2825840 (-) 282 WP_071527557.1 hypothetical protein -
  G6P90_RS13745 (G6P90_13750) pgsA 2826834..2827382 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  G6P90_RS13750 (G6P90_13755) uvrC 2827439..2829271 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  G6P90_RS13755 (G6P90_13760) letA 2829268..2829924 (-) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  G6P90_RS24565 - 2830066..2830137 (+) 72 Protein_2712 transcriptional regulator -
  G6P90_RS13760 (G6P90_13765) yecU 2830220..2830396 (+) 177 WP_001326718.1 protein YecU -
  G6P90_RS13765 (G6P90_13770) yecF 2830383..2830607 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  G6P90_RS13770 (G6P90_13775) sdiA 2830674..2831396 (-) 723 WP_001154267.1 transcriptional regulator SdiA -
  G6P90_RS13775 (G6P90_13780) tcyN 2831626..2832378 (-) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  G6P90_RS13780 (G6P90_13785) tcyL 2832375..2833043 (-) 669 WP_001158218.1 cystine ABC transporter permease -
  G6P90_RS13785 (G6P90_13790) dcyD 2833058..2834044 (-) 987 WP_001128215.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=372090 G6P90_RS13755 WP_000611335.1 2829268..2829924(-) (letA) [Escherichia coli strain p10A]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=372090 G6P90_RS13755 WP_000611335.1 2829268..2829924(-) (letA) [Escherichia coli strain p10A]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGAGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTTAAAATCATCATG
CTTACGGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCAGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCTGGGCAGCGTTACATTGCTTCTGATATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACTAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486

Multiple sequence alignment