Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG   Type   Machinery gene
Locus tag   ST64987_RS08875 Genome accession   NZ_CP049053
Coordinates   1684300..1684617 (-) Length   105 a.a.
NCBI ID   WP_011681685.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST64987     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1679300..1689617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST64987_RS08840 (ST64987_1691) - 1679659..1680321 (-) 663 WP_011681679.1 CPBP family intramembrane glutamic endopeptidase -
  ST64987_RS08845 (ST64987_1692) - 1680418..1680861 (-) 444 WP_011681680.1 hypothetical protein -
  ST64987_RS10400 (ST64987_1693) - 1680935..1681360 (-) 426 WP_014608739.1 CPBP family intramembrane glutamic endopeptidase -
  ST64987_RS10405 (ST64987_1694) - 1681317..1681592 (-) 276 WP_011681681.1 hypothetical protein -
  ST64987_RS08860 (ST64987_1695) - 1681604..1681801 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  ST64987_RS08865 (ST64987_1696) - 1682050..1683243 (-) 1194 WP_014608740.1 acetate kinase -
  ST64987_RS08870 (ST64987_1697) comGH 1683299..1684255 (-) 957 WP_011681684.1 class I SAM-dependent methyltransferase Machinery gene
  ST64987_RS08875 (ST64987_1698) comGG 1684300..1684617 (-) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG Machinery gene
  ST64987_RS08880 (ST64987_1699) comGF 1684595..1685032 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  ST64987_RS08885 (ST64987_1700) comGE 1685016..1685309 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE Machinery gene
  ST64987_RS08890 (ST64987_1701) comGD 1685281..1685709 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  ST64987_RS08895 (ST64987_1702) comGC 1685669..1685995 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  ST64987_RS08900 (ST64987_1703) comGB 1685992..1687092 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  ST64987_RS08905 (ST64987_1704) comGA/cglA/cilD 1686974..1687915 (-) 942 WP_014608745.1 competence type IV pilus ATPase ComGA Machinery gene
  ST64987_RS08910 (ST64987_1705) - 1687996..1688358 (-) 363 WP_167401603.1 DUF1033 family protein -

Sequence


Protein


Download         Length: 105 a.a.        Molecular weight: 11851.01 Da        Isoelectric Point: 10.6334

>NTDB_id=371949 ST64987_RS08875 WP_011681685.1 1684300..1684617(-) (comGG) [Streptococcus thermophilus strain ST64987]
MLLKKQVRGGVLLYALFMAGIFILLLQVYLERVVASSRQNQAQIVASQSRLMAEMTMDLVDKEAGAFSFSQGTTTYEVKG
KQVVVRVVSKGQIKTYRYVKKQDQK

Nucleotide


Download         Length: 318 bp        

>NTDB_id=371949 ST64987_RS08875 WP_011681685.1 1684300..1684617(-) (comGG) [Streptococcus thermophilus strain ST64987]
ATGCTTTTGAAAAAACAGGTTAGGGGAGGCGTTCTTCTCTACGCTCTTTTTATGGCTGGCATTTTTATACTCCTTCTTCA
GGTTTATCTGGAACGGGTGGTAGCTAGCTCTAGACAAAACCAAGCGCAAATAGTGGCCAGTCAAAGCCGTCTCATGGCAG
AGATGACTATGGACTTGGTGGATAAGGAAGCAGGTGCTTTTAGTTTTTCTCAGGGGACTACGACTTACGAGGTTAAGGGT
AAGCAAGTGGTTGTCAGAGTTGTCAGTAAAGGCCAAATCAAGACCTATCGTTATGTGAAGAAACAAGATCAGAAATAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

45.455

94.286

0.429

  comGG Streptococcus mutans UA159

45.455

94.286

0.429

  comGG/cglG Streptococcus pneumoniae Rx1

43.333

85.714

0.371

  comGG/cglG Streptococcus pneumoniae TIGR4

43.333

85.714

0.371

  comGG/cglG Streptococcus pneumoniae D39

43.333

85.714

0.371

  comGG/cglG Streptococcus pneumoniae R6

43.333

85.714

0.371

  comGG/cglG Streptococcus mitis NCTC 12261

42.222

85.714

0.362