Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   MCR_RS04210 Genome accession   NC_014147
Coordinates   930289..931230 (+) Length   313 a.a.
NCBI ID   WP_003659761.1    Uniprot ID   -
Organism   Moraxella catarrhalis BBH18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 925289..936230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCR_RS04200 (MCR_0918) - 926211..927623 (-) 1413 WP_003666204.1 pitrilysin family protein -
  MCR_RS04205 (MCR_0920) - 928038..930161 (+) 2124 WP_013107918.1 PhoX family phosphatase -
  MCR_RS04210 (MCR_0921) pilA 930289..931230 (+) 942 WP_003659761.1 signal recognition particle-docking protein FtsY Machinery gene
  MCR_RS04215 (MCR_0922) - 931227..931820 (+) 594 WP_003673115.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  MCR_RS04220 (MCR_0923) - 931861..932886 (+) 1026 WP_003658196.1 quinone-dependent dihydroorotate dehydrogenase -
  MCR_RS04225 (MCR_0924) - 932891..933403 (+) 513 WP_003658194.1 CvpA family protein -
  MCR_RS04230 (MCR_0925) purF 933469..934998 (+) 1530 WP_003665886.1 amidophosphoribosyltransferase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 33638.56 Da        Isoelectric Point: 5.2587

>NTDB_id=37190 MCR_RS04210 WP_003659761.1 930289..931230(+) (pilA) [Moraxella catarrhalis BBH18]
MSENEKGGWFSRMKAGLSKSSKNLSEGLVNVLVGGKQIDDELLEEVEDQLLVADIGVNATNRIIKNLTEQTARGDLIYSH
ALYKALKTELTDILTPKVAPLIIDTTKKPYVILMVGVNGVGKTTTIGKLAKRLQNEGKSVMLAAGDTFRAAATEQLQIWG
ERNGIAVIAQGHGSDSASVIFDAMQSAKAKGIDVLIADTAGRLQNKTHLMNELEKVVRVMKKGDETAPHETMIVLDAGTG
QNAINQVQVFSEAVNLTGISVTKLDGTAKGGVVFNIAQNTDIPIRFIGVGEGIDDLQPFKPKDFVDALLEKEE

Nucleotide


Download         Length: 942 bp        

>NTDB_id=37190 MCR_RS04210 WP_003659761.1 930289..931230(+) (pilA) [Moraxella catarrhalis BBH18]
ATGAGCGAAAACGAAAAAGGTGGCTGGTTTTCCCGCATGAAAGCTGGACTATCAAAGTCAAGTAAAAACCTATCAGAAGG
GCTGGTTAATGTCTTGGTTGGTGGCAAACAGATTGATGATGAGCTGCTTGAGGAAGTTGAAGATCAGCTACTGGTTGCTG
ATATTGGTGTCAATGCCACCAATCGCATTATCAAAAATCTCACCGAGCAGACCGCGCGTGGCGATTTGATTTACTCGCAT
GCTTTGTATAAAGCACTCAAAACCGAGTTGACCGACATTTTGACGCCAAAAGTTGCACCTTTGATTATTGATACCACCAA
AAAGCCCTATGTCATTTTGATGGTGGGTGTCAATGGTGTTGGTAAGACCACCACAATCGGTAAGCTTGCCAAGCGTTTAC
AAAATGAGGGTAAGTCGGTCATGCTTGCCGCTGGCGACACTTTTCGAGCCGCCGCCACCGAGCAGCTACAAATTTGGGGT
GAGCGAAATGGCATTGCTGTCATCGCTCAAGGTCATGGCTCAGACAGTGCTTCGGTGATTTTTGATGCCATGCAGTCTGC
CAAGGCAAAGGGCATTGATGTGCTTATCGCTGATACAGCAGGACGCCTACAAAATAAAACGCATCTGATGAATGAACTTG
AAAAGGTTGTGCGTGTGATGAAAAAGGGCGACGAAACTGCTCCGCATGAGACGATGATCGTGCTAGATGCAGGCACAGGT
CAAAACGCCATCAATCAAGTGCAAGTATTTTCAGAAGCAGTGAATTTAACTGGCATCAGTGTTACAAAGCTAGATGGGAC
AGCCAAAGGTGGTGTGGTATTTAATATCGCCCAAAATACGGATATTCCCATCCGTTTTATCGGCGTTGGAGAGGGTATTG
ACGACCTACAGCCATTTAAGCCAAAAGATTTTGTTGATGCACTTTTGGAAAAAGAAGAATGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(110-309)

SRP54-type protein, helical bundle domain (SRP54_N)

(25-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

53.074

98.722

0.524

Multiple sequence alignment