Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ST64987_RS03110 Genome accession   NZ_CP049053
Coordinates   574135..574731 (+) Length   198 a.a.
NCBI ID   WP_014608122.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST64987     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 569135..579731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST64987_RS03085 (ST64987_0566) - 569279..569491 (+) 213 WP_167401455.1 alpha/beta fold hydrolase -
  ST64987_RS03090 (ST64987_0567) - 569740..569931 (+) 192 WP_167401456.1 alpha/beta fold hydrolase -
  ST64987_RS03095 (ST64987_0568) - 570095..570949 (+) 855 WP_167401457.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  ST64987_RS03100 (ST64987_0569) - 570953..571789 (+) 837 WP_011680926.1 NAD(P)H-hydrate dehydratase -
  ST64987_RS03105 (ST64987_0570) pbp2b 571911..574025 (+) 2115 WP_167401458.1 penicillin-binding protein PBP2B -
  ST64987_RS03110 (ST64987_0571) recR 574135..574731 (+) 597 WP_014608122.1 recombination mediator RecR Machinery gene
  ST64987_RS10150 - 574872..575668 (+) 797 Protein_543 PRD domain-containing protein -
  ST64987_RS03130 (ST64987_0574) ybeY 575887..576384 (+) 498 WP_002950224.1 rRNA maturation RNase YbeY -
  ST64987_RS03135 (ST64987_0575) - 576365..576769 (+) 405 WP_002946201.1 diacylglycerol kinase family protein -
  ST64987_RS03140 (ST64987_0576) era 576788..577687 (+) 900 WP_011680930.1 GTPase Era -
  ST64987_RS03145 (ST64987_0577) mutM 577734..578555 (+) 822 WP_011225698.1 DNA-formamidopyrimidine glycosylase -
  ST64987_RS03150 (ST64987_0578) coaE 578552..579145 (+) 594 WP_014621355.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21802.00 Da        Isoelectric Point: 4.5326

>NTDB_id=371895 ST64987_RS03110 WP_014608122.1 574135..574731(+) (recR) [Streptococcus thermophilus strain ST64987]
MLYPTPIAKLIDSFSKFPGIGAKTATRLAFYTISMSDEDVNDFAKNLLAAKRELTYCSVCGRLTDDDPCIICTDETRDRT
KILVVEDSKDVSAMEKIQEYRGLYHVLQGLISPMNGVGPDDINLKSLITRLMDSEVDEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=371895 ST64987_RS03110 WP_014608122.1 574135..574731(+) (recR) [Streptococcus thermophilus strain ST64987]
ATGCTTTATCCTACTCCAATTGCTAAACTGATTGATAGTTTTTCAAAATTTCCAGGAATTGGGGCTAAGACGGCGACACG
TCTGGCTTTCTATACCATTAGCATGTCTGATGAAGATGTCAATGATTTTGCAAAAAATCTTTTAGCAGCAAAACGTGAGT
TGACCTATTGTTCAGTTTGTGGTCGCTTGACTGATGATGACCCATGTATTATTTGTACGGATGAAACTAGAGACCGTACT
AAGATTTTGGTTGTTGAGGACTCCAAAGATGTTTCTGCTATGGAAAAGATTCAGGAATATCGTGGTCTCTACCATGTGCT
TCAAGGGCTTATCTCCCCTATGAATGGTGTTGGACCAGATGATATTAATTTAAAAAGTTTGATTACCCGTCTTATGGATA
GCGAGGTTGACGAGGTCATCATCGCAACTAATGCAACGGCCGATGGTGAGGCAACCTCTATGTATATTTCACGGGTCCTC
AAACCTGCAGGTATTAAGGTGACCCGCCTAGCGCGTGGGCTGGCTGTTGGTTCTGACATCGAGTACGCTGATGAAGTAAC
CTTGCTAAGAGCCATCGAGAATCGAACAGAACTGTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.364

100

0.864
  recR Bacillus subtilis subsp. subtilis str. 168

63.131

100

0.631
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.692

98.485

0.47

Multiple sequence alignment