Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   G5C00_RS04670 Genome accession   NZ_CP048934
Coordinates   895905..897329 (+) Length   474 a.a.
NCBI ID   WP_000148130.1    Uniprot ID   -
Organism   Escherichia coli strain 190693     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 890905..902329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C00_RS04630 (G5C00_04610) - 891475..892068 (-) 594 WP_000805577.1 tail fiber assembly protein -
  G5C00_RS04635 (G5C00_04615) - 892068..892376 (-) 309 Protein_921 phage tail protein -
  G5C00_RS04640 (G5C00_04620) - 892289..892576 (-) 288 WP_000141754.1 hypothetical protein -
  G5C00_RS25045 - 892689..893008 (+) 320 Protein_923 hypothetical protein -
  G5C00_RS04645 (G5C00_04625) yfdR 893090..893626 (+) 537 WP_000008235.1 5'-deoxynucleotidase -
  G5C00_RS04650 (G5C00_04630) - 893617..893979 (+) 363 WP_001242744.1 hypothetical protein -
  G5C00_RS04655 (G5C00_04635) yfdT 893979..894284 (+) 306 WP_000627693.1 protein YfdT -
  G5C00_RS04660 (G5C00_04640) - 894373..894564 (+) 192 WP_000132739.1 AlpA family phage regulatory protein -
  G5C00_RS04665 (G5C00_04645) - 894545..895723 (-) 1179 WP_001007952.1 site-specific integrase -
  G5C00_RS04670 (G5C00_04650) sbcB 895905..897329 (+) 1425 WP_000148130.1 exodeoxyribonuclease I Machinery gene
  G5C00_RS04675 (G5C00_04655) tsuB 897372..897599 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  G5C00_RS04680 (G5C00_04660) tsuA 897613..898671 (-) 1059 WP_000492348.1 thiosulfate utilization transporter TsuA/YeeE -
  G5C00_RS04685 (G5C00_04665) plaP 898850..900208 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  G5C00_RS04690 (G5C00_04670) yoeI 900198..900260 (-) 63 WP_010723108.1 membrane protein YoeI -
  G5C00_RS04695 (G5C00_04675) yeeY 900475..901404 (-) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  G5C00_RS04700 (G5C00_04680) yeeZ 901450..902274 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54323.60 Da        Isoelectric Point: 5.6054

>NTDB_id=371787 G5C00_RS04670 WP_000148130.1 895905..897329(+) (sbcB) [Escherichia coli strain 190693]
MTGTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=371787 G5C00_RS04670 WP_000148130.1 895905..897329(+) (sbcB) [Escherichia coli strain 190693]
ATGACAGGCACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGTGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
TGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGTATG
CCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGCAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584

Multiple sequence alignment