Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   G5S46_RS02310 Genome accession   NZ_CP048929
Coordinates   451887..452360 (+) Length   157 a.a.
NCBI ID   WP_025455985.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain CT213     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446887..457360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S46_RS02285 (G5S46_02305) dnaB 447302..448708 (+) 1407 WP_050171192.1 replicative DNA helicase -
  G5S46_RS02290 (G5S46_02310) pilH 449016..449678 (+) 663 WP_050162868.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  G5S46_RS02295 (G5S46_02315) pilV 449710..450321 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Regulator
  G5S46_RS02300 (G5S46_02320) pilJ 450318..451298 (+) 981 WP_219501175.1 PilW family protein Machinery gene
  G5S46_RS02305 (G5S46_02325) pilK 451277..451885 (+) 609 WP_050171190.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  G5S46_RS02310 (G5S46_02330) pilL 451887..452360 (+) 474 WP_025455985.1 PilX family type IV pilin Machinery gene
  G5S46_RS02315 (G5S46_02335) - 452430..452738 (-) 309 WP_010359926.1 AzlD family protein -
  G5S46_RS02320 (G5S46_02340) - 452735..453445 (-) 711 Protein_458 AzlC family ABC transporter permease -
  G5S46_RS02325 (G5S46_02345) dut 453611..454063 (+) 453 WP_010359930.1 dUTP diphosphatase -
  G5S46_RS02330 (G5S46_02350) dapC 454141..455328 (+) 1188 WP_010359932.1 succinyldiaminopimelate transaminase -
  G5S46_RS02335 (G5S46_02355) yaaA 455639..456418 (+) 780 WP_003706583.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17439.16 Da        Isoelectric Point: 9.7327

>NTDB_id=371725 G5S46_RS02310 WP_025455985.1 451887..452360(+) (pilL) [Neisseria gonorrhoeae strain CT213]
MEQKGFTLIEMMIVVTILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDTLKSKLEIFVSGYKM
NPKIAKKYSVSVRLVNEGKPRAYRLVGVPNAGTGYTLSVWMNSVGDGYKCRNAASAQAYSETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=371725 G5S46_RS02310 WP_025455985.1 451887..452360(+) (pilL) [Neisseria gonorrhoeae strain CT213]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCACGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATGATACCCTCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGCGGCTTGTCAATGAGGGAAAACCAAGGGCATACAGGTTGGTCGG
TGTTCCGAACGCGGGGACGGGTTATACTCTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTAATGCCG
CTTCTGCCCAGGCCTATTCGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

93.631

100

0.936
  pilX Neisseria meningitidis 8013

85.35

100

0.854

Multiple sequence alignment