Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   CXB71_RS12800 Genome accession   NZ_CP041361
Coordinates   2613551..2613886 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain WRN014     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2608551..2618886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXB71_RS12780 (CXB71_12780) gcvT 2609162..2610262 (-) 1101 WP_058906182.1 glycine cleavage system aminomethyltransferase GcvT -
  CXB71_RS12785 (CXB71_12785) - 2610685..2612355 (+) 1671 WP_003153107.1 DEAD/DEAH box helicase -
  CXB71_RS12790 (CXB71_12790) - 2612373..2613167 (+) 795 WP_014305407.1 YqhG family protein -
  CXB71_RS12795 (CXB71_12795) sinI 2613344..2613517 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  CXB71_RS12800 (CXB71_12800) sinR 2613551..2613886 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  CXB71_RS12805 (CXB71_12805) tasA 2613934..2614719 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  CXB71_RS12810 (CXB71_12810) sipW 2614783..2615367 (-) 585 WP_003153100.1 signal peptidase I SipW -
  CXB71_RS12815 (CXB71_12815) tapA 2615339..2616010 (-) 672 WP_003153099.1 amyloid fiber anchoring/assembly protein TapA -
  CXB71_RS12820 (CXB71_12820) - 2616269..2616598 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  CXB71_RS12825 (CXB71_12825) - 2616638..2616817 (-) 180 WP_003153093.1 YqzE family protein -
  CXB71_RS12830 (CXB71_12830) comGG 2616874..2617251 (-) 378 WP_003153092.1 competence type IV pilus minor pilin ComGG Machinery gene
  CXB71_RS12835 (CXB71_12835) comGF 2617252..2617752 (-) 501 WP_223203779.1 competence type IV pilus minor pilin ComGF -
  CXB71_RS12840 (CXB71_12840) comGE 2617661..2617975 (-) 315 WP_003153089.1 competence type IV pilus minor pilin ComGE -
  CXB71_RS12845 (CXB71_12845) comGD 2617959..2618396 (-) 438 WP_003153088.1 competence type IV pilus minor pilin ComGD Machinery gene
  CXB71_RS12850 (CXB71_12850) comGC 2618386..2618694 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=371585 CXB71_RS12800 WP_003153104.1 2613551..2613886(+) (sinR) [Bacillus velezensis strain WRN014]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=371585 CXB71_RS12800 WP_003153104.1 2613551..2613886(+) (sinR) [Bacillus velezensis strain WRN014]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment