Detailed information    

insolico Bioinformatically predicted

Overview


Name   comX   Type   Regulator
Locus tag   FLP15_RS02495 Genome accession   NZ_CP041356
Coordinates   490095..490382 (-) Length   95 a.a.
NCBI ID   WP_223804698.1    Uniprot ID   -
Organism   Lactococcus protaetiae strain KACC 19320     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 485095..495382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLP15_RS02495 (FLP15_02495) comX 490095..490382 (-) 288 WP_223804698.1 hypothetical protein Regulator
  FLP15_RS02500 (FLP15_02500) dnaA 490773..492140 (+) 1368 WP_142765868.1 chromosomal replication initiator protein DnaA -
  FLP15_RS02505 (FLP15_02505) dnaN 492297..493438 (+) 1142 Protein_484 DNA polymerase III subunit beta -

Sequence


Protein


Download         Length: 95 a.a.        Molecular weight: 11259.71 Da        Isoelectric Point: 4.7876

>NTDB_id=371488 FLP15_RS02495 WP_223804698.1 490095..490382(-) (comX) [Lactococcus protaetiae strain KACC 19320]
MIDEIRHSQAKKRGFDQLGAVDIYEYSDVISSHGETPESALVFNHLLAEVYECLRPHYQELLVRQMRGEELTRMERYRLK
EKIKSILFDLDDSEE

Nucleotide


Download         Length: 288 bp        

>NTDB_id=371488 FLP15_RS02495 WP_223804698.1 490095..490382(-) (comX) [Lactococcus protaetiae strain KACC 19320]
TTGATAGATGAAATCCGTCATAGCCAAGCGAAAAAACGAGGTTTTGACCAACTAGGAGCGGTAGATATCTATGAGTATTC
GGATGTCATTTCGTCACACGGAGAGACTCCAGAGAGTGCCCTTGTATTTAATCACCTTCTAGCAGAGGTGTATGAGTGCC
TTCGTCCTCATTACCAAGAGCTTCTCGTCCGCCAAATGCGAGGAGAAGAACTGACTCGTATGGAGCGCTATCGGCTCAAA
GAAAAAATTAAATCTATTCTTTTTGATTTAGATGACTCGGAAGAATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. cremoris KW2

72.826

96.842

0.705

  comX Lactococcus lactis subsp. lactis strain DGCC12653

63.043

96.842

0.611


Multiple sequence alignment