Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   FLP15_RS01405 Genome accession   NZ_CP041356
Coordinates   295271..295765 (-) Length   164 a.a.
NCBI ID   WP_142765711.1    Uniprot ID   A0A514Z695
Organism   Lactococcus protaetiae strain KACC 19320     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 290271..300765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLP15_RS01405 (FLP15_01405) comX 295271..295765 (-) 495 WP_142765711.1 sigma-70 family RNA polymerase sigma factor Regulator
  FLP15_RS01410 (FLP15_01410) ezrA 295990..297720 (-) 1731 WP_142765712.1 septation ring formation regulator EzrA -
  FLP15_RS01415 (FLP15_01415) tsf 297909..298937 (-) 1029 WP_142765713.1 translation elongation factor Ts -
  FLP15_RS01420 (FLP15_01420) rpsB 299059..299826 (-) 768 WP_120772611.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 19483.35 Da        Isoelectric Point: 6.4970

>NTDB_id=371485 FLP15_RS01405 WP_142765711.1 295271..295765(-) (comX) [Lactococcus protaetiae strain KACC 19320]
MPQKDKINFDQAFSRLKPIVLKAMKQLRVRSWTYDDYLQEGMIVLYHLLESSVGFEGLPVKFKVQYHQRLIDEIRHSQAK
KRGFDQLGAVDIYEYSDVISSHGETPESALVFNHLLAEVYECLRPHYQELLVRQMRGEELTRMERYRLKEKIKSILFDLD
DSEE

Nucleotide


Download         Length: 495 bp        

>NTDB_id=371485 FLP15_RS01405 WP_142765711.1 295271..295765(-) (comX) [Lactococcus protaetiae strain KACC 19320]
TTGCCACAAAAAGATAAAATAAATTTTGACCAAGCCTTTTCAAGACTTAAACCAATTGTCTTAAAAGCAATGAAACAACT
TCGAGTTCGCTCTTGGACATATGACGATTATCTTCAAGAAGGAATGATAGTTCTGTATCACTTACTTGAATCAAGTGTGG
GATTCGAGGGACTACCAGTGAAATTCAAAGTCCAATATCACCAACGTTTGATAGATGAAATCCGTCATAGCCAAGCGAAA
AAACGAGGTTTTGACCAACTAGGAGCGGTAGATATCTATGAGTATTCGGATGTCATTTCGTCACACGGAGAGACTCCAGA
GAGTGCCCTTGTATTTAATCACCTTCTAGCAGAGGTGTATGAGTGCCTTCGTCCTCATTACCAAGAGCTTCTCGTCCGCC
AAATGCGAGGAGAAGAACTGACTCGTATGGAGCGCTATCGGCTCAAAGAAAAAATTAAATCTATTCTTTTTGATTTAGAT
GACTCGGAAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A514Z695

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. cremoris KW2

65.359

93.293

0.61
  comX Lactococcus lactis subsp. lactis strain DGCC12653

60.39

93.902

0.567

Multiple sequence alignment