Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1977   Type   Machinery gene
Locus tag   LPA_RS10450 Genome accession   NC_014125
Coordinates   2339831..2340637 (-) Length   268 a.a.
NCBI ID   WP_011946907.1    Uniprot ID   A0A378K9K9
Organism   Legionella pneumophila 2300/99 Alcoy     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2334831..2345637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPA_RS10425 (lpa_02906) - 2335271..2335921 (-) 651 WP_013101629.1 lysoplasmalogenase -
  LPA_RS10430 (lpa_02907) - 2336001..2336501 (-) 501 WP_011214243.1 hypothetical protein -
  LPA_RS10435 (lpa_02908) - 2336993..2337853 (+) 861 WP_013101630.1 polysaccharide deacetylase family protein -
  LPA_RS10440 (lpa_02910) - 2337971..2339167 (-) 1197 WP_013101631.1 murein transglycosylase A -
  LPA_RS10445 (lpa_02911) lpp1976 2339277..2339834 (-) 558 WP_011946906.1 hypothetical protein Machinery gene
  LPA_RS10450 (lpa_02913) lpp1977 2339831..2340637 (-) 807 WP_011946907.1 PilW family protein Machinery gene
  LPA_RS10455 (lpa_02914) lpp1978 2340576..2340890 (-) 315 WP_011946908.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LPA_RS10460 (lpa_02915) hisC 2341050..2342159 (+) 1110 WP_011946909.1 histidinol-phosphate transaminase -
  LPA_RS10465 (lpa_02916) - 2342196..2342537 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  LPA_RS10475 (lpa_02917) secF 2342715..2343632 (-) 918 WP_010947716.1 protein translocase subunit SecF -
  LPA_RS10480 (lpa_02918) secD 2343645..2345501 (-) 1857 WP_011214250.1 protein translocase subunit SecD -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31367.53 Da        Isoelectric Point: 9.4273

>NTDB_id=37147 LPA_RS10450 WP_011946907.1 2339831..2340637(-) (lpp1977) [Legionella pneumophila 2300/99 Alcoy]
MLRGLKKANQLFAPMIWVLIEMGRQTGFSLSEMLISLFLASIITIPLTQFYIRSKPQYLKAQERLEINFDLLWIGDLLSD
SIRKAGFTPCVSVEKLKTFDSRHAERKIINFQIENMPQVQLRINRMSDVYTEVANFMSPTQIVIEESVISNIKHPLIISD
CRQGEVHTVSKIDKLSNGYQITLKKPLQFRYDEIAYLGEWLEETWFTKQNEKGEKTLHYKLFQTEELSPFIHEFYVTRRL
IKQRPVLDFSIGSDKETLRKISVSVRNL

Nucleotide


Download         Length: 807 bp        

>NTDB_id=37147 LPA_RS10450 WP_011946907.1 2339831..2340637(-) (lpp1977) [Legionella pneumophila 2300/99 Alcoy]
ATGTTACGTGGTTTAAAAAAAGCCAATCAATTATTCGCTCCTATGATCTGGGTGCTAATTGAAATGGGAAGACAAACAGG
ATTTAGTTTATCTGAGATGCTAATTAGTCTTTTTCTGGCAAGTATTATAACGATACCCCTTACTCAGTTTTATATAAGAA
GCAAGCCTCAATATCTAAAGGCACAAGAACGGTTAGAAATTAATTTTGATTTGCTGTGGATTGGTGATTTACTAAGCGAC
AGTATTAGAAAGGCTGGATTTACTCCATGCGTAAGTGTCGAAAAATTAAAAACTTTTGATTCTCGACATGCAGAGAGGAA
AATAATTAATTTTCAAATTGAAAATATGCCACAAGTTCAACTGCGTATTAACAGAATGAGTGATGTTTATACCGAAGTGG
CGAATTTTATGAGCCCAACACAAATAGTGATTGAAGAGTCAGTAATATCAAATATAAAACACCCATTAATTATTTCTGAT
TGCCGGCAAGGAGAAGTACATACAGTTTCAAAAATAGACAAACTAAGCAATGGATATCAAATTACTTTAAAAAAACCACT
GCAGTTCCGGTACGACGAAATTGCTTACTTGGGAGAGTGGCTTGAAGAAACATGGTTTACTAAACAAAATGAAAAGGGTG
AAAAGACATTACATTACAAACTGTTTCAAACAGAAGAATTAAGTCCATTCATTCATGAATTTTATGTTACCAGACGTCTT
ATCAAACAGAGGCCAGTATTGGATTTTTCAATTGGTAGCGATAAGGAAACGCTACGTAAAATCAGTGTTTCGGTACGAAA
TTTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(22-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378K9K9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1977 Legionella pneumophila str. Paris

97.388

100

0.974
  lpp1977 Legionella pneumophila strain ERS1305867

97.388

100

0.974

Multiple sequence alignment