Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IHMA87_RS10150 Genome accession   NZ_CP041354
Coordinates   2137213..2137848 (+) Length   211 a.a.
NCBI ID   WP_034078476.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain AZPAE15042     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2132213..2142848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHMA87_RS10135 (IHMA87_01982) - 2132909..2134153 (+) 1245 WP_003156869.1 lipoprotein-releasing ABC transporter permease subunit -
  IHMA87_RS10140 (IHMA87_01983) - 2134254..2134787 (-) 534 WP_034078473.1 DUF2062 domain-containing protein -
  IHMA87_RS10145 (IHMA87_01984) comA 2134918..2137140 (+) 2223 WP_034078474.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IHMA87_RS10150 (IHMA87_01985) exbB 2137213..2137848 (+) 636 WP_034078476.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IHMA87_RS10155 (IHMA87_01986) - 2137845..2138285 (+) 441 WP_012075163.1 ExbD/TolR family protein -
  IHMA87_RS10160 (IHMA87_01987) lpxK 2138285..2139283 (+) 999 WP_003157521.1 tetraacyldisaccharide 4'-kinase -
  IHMA87_RS10165 (IHMA87_01988) - 2139321..2139506 (+) 186 WP_003157522.1 Trm112 family protein -
  IHMA87_RS10170 (IHMA87_01989) kdsB 2139506..2140270 (+) 765 WP_012075164.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IHMA87_RS10175 (IHMA87_01990) - 2140270..2140734 (+) 465 WP_012075165.1 low molecular weight protein-tyrosine-phosphatase -
  IHMA87_RS10180 (IHMA87_01991) murB 2140731..2141750 (+) 1020 WP_034078478.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22832.02 Da        Isoelectric Point: 7.2795

>NTDB_id=371449 IHMA87_RS10150 WP_034078476.1 2137213..2137848(+) (exbB) [Pseudomonas aeruginosa strain AZPAE15042]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVGYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=371449 IHMA87_RS10150 WP_034078476.1 2137213..2137848(+) (exbB) [Pseudomonas aeruginosa strain AZPAE15042]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCACTGGGCGAGATCCTCGCTGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCTTCCGGCGTCATCCACGAACTTGAGCGCTATCT
CAACGCCCTCGGCACCATCGCCGCGATGGCTCCGCTGCTCGGCCTGCTGGGCACCGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCGCTGATCACCACGGCCGCC
GGCCTGCTGGTGGCGATCCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGTCGCGTCGACGAGCTGGTGATCGCCATGGA
ACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGAAGTCGGCTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.569

100

0.806

Multiple sequence alignment