Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FKL89_RS04535 Genome accession   NZ_CP041352
Coordinates   990029..991276 (-) Length   415 a.a.
NCBI ID   WP_156861646.1    Uniprot ID   -
Organism   Casimicrobium huifangae strain SJ-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 985029..996276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FKL89_RS04505 - 986018..986896 (+) 879 WP_156861640.1 ATP-binding protein -
  FKL89_RS04510 - 986932..987339 (+) 408 WP_272953732.1 NUDIX domain-containing protein -
  FKL89_RS04515 - 987503..987688 (-) 186 WP_156861642.1 DNA gyrase inhibitor YacG -
  FKL89_RS04520 zapD 987713..988507 (-) 795 WP_156861643.1 cell division protein ZapD -
  FKL89_RS04525 coaE 988504..989163 (-) 660 WP_156861644.1 dephospho-CoA kinase -
  FKL89_RS04530 pilD 989178..990020 (-) 843 WP_156861645.1 prepilin peptidase Machinery gene
  FKL89_RS04535 pilC 990029..991276 (-) 1248 WP_156861646.1 type II secretion system F family protein Machinery gene
  FKL89_RS04540 pilB 991319..993034 (-) 1716 WP_156861647.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FKL89_RS04545 ffh 993199..994584 (+) 1386 WP_156861648.1 signal recognition particle protein -
  FKL89_RS04550 ybiB 994782..995708 (+) 927 WP_156861649.1 DNA-binding protein YbiB -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45193.37 Da        Isoelectric Point: 10.2825

>NTDB_id=371398 FKL89_RS04535 WP_156861646.1 990029..991276(-) (pilC) [Casimicrobium huifangae strain SJ-1]
MATAAQTPARAARPTRPEVKASMYSWEGIDRAGKKVRGEMRAASETVVANALRRQGIKVGKIKKQTFKGGGKISEKEIAL
FTRQLATMTRAGVPLLQAFDIAARSTGNNRLSRLLLEVKGDIETGNSLAASFKRHPMQFDELYCNLVGAGEQAGILDSIL
DRLAMYKEKILALKGKIKSALFYPAIVIVIATVVVAIIMWFVIPSFKQVFTSFGADLPWLTNVVVAMSDWFVKFWYVVVV
IPVAAFMILAYLWKRVPAIKHTVDRMSLKLPVLGEILEKAAVARWTRTLATMFAAGVPLVDALTAVGGASGNQVFLDATK
RIQNNVSTGTALTVAMEDTGVFPNMALQMTRIGEETGALDSMLSKVADFYEREVDDAVSALSSLIEPIMIVFLGVVIGTI
VVAMYLPIFKLGQVV

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=371398 FKL89_RS04535 WP_156861646.1 990029..991276(-) (pilC) [Casimicrobium huifangae strain SJ-1]
ATGGCAACCGCCGCGCAAACCCCGGCACGAGCTGCTCGTCCCACACGCCCCGAAGTCAAGGCGAGTATGTACTCGTGGGA
AGGCATTGATCGCGCTGGCAAGAAGGTGCGCGGCGAAATGCGTGCTGCGTCGGAAACCGTCGTCGCCAACGCCTTGCGAC
GCCAGGGTATCAAGGTCGGCAAGATCAAAAAGCAGACCTTCAAGGGCGGCGGCAAGATCAGCGAAAAGGAAATCGCGCTC
TTTACCCGCCAACTCGCGACAATGACCCGGGCAGGGGTGCCGTTGCTACAGGCCTTTGACATTGCAGCGCGGAGTACGGG
CAACAATCGCCTGTCGCGCCTCCTCCTTGAGGTGAAAGGCGACATCGAGACCGGCAACAGCCTTGCGGCTTCGTTCAAGC
GGCACCCGATGCAGTTTGACGAGTTGTACTGCAACCTCGTAGGTGCCGGCGAGCAGGCCGGTATTCTCGACTCCATTCTT
GATCGCCTCGCGATGTACAAGGAGAAAATCCTTGCGCTGAAAGGCAAGATCAAAAGCGCGTTGTTCTACCCCGCGATCGT
TATTGTCATCGCGACTGTCGTTGTCGCGATCATCATGTGGTTTGTGATTCCCAGCTTCAAGCAGGTGTTCACCAGCTTCG
GTGCCGACTTGCCGTGGTTGACCAACGTCGTCGTGGCAATGTCTGACTGGTTTGTGAAATTTTGGTACGTCGTGGTGGTC
ATTCCGGTCGCGGCGTTCATGATCCTCGCTTATCTCTGGAAGCGCGTACCTGCGATCAAGCACACGGTCGATCGCATGTC
TCTCAAGCTGCCAGTGCTGGGCGAAATTCTCGAAAAGGCGGCCGTGGCCCGCTGGACGCGAACCTTGGCGACGATGTTTG
CGGCCGGCGTGCCCTTGGTTGATGCACTAACGGCAGTAGGCGGCGCGTCCGGCAACCAGGTGTTTCTCGACGCCACCAAG
CGGATCCAGAACAACGTATCTACTGGCACCGCGCTGACGGTTGCGATGGAAGATACCGGCGTGTTCCCCAACATGGCGCT
GCAGATGACCCGTATCGGCGAAGAAACGGGTGCACTGGACAGCATGCTGTCGAAAGTCGCAGACTTTTATGAGCGTGAAG
TAGACGATGCCGTCAGTGCATTGTCATCACTGATAGAGCCGATCATGATCGTGTTTCTGGGTGTGGTTATCGGTACGATT
GTTGTCGCAATGTATCTGCCCATCTTCAAGCTCGGTCAGGTGGTATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(285-407)

Type II secretion system (T2SS), protein F (T2SSF)

(81-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

50

97.349

0.487
  pilC Legionella pneumophila strain ERS1305867

49.497

95.904

0.475
  pilG Neisseria gonorrhoeae MS11

47.487

95.904

0.455
  pilC Acinetobacter baylyi ADP1

47.355

95.663

0.453
  pilG Neisseria meningitidis 44/76-A

47.236

95.904

0.453
  pilC Acinetobacter baumannii D1279779

46.096

95.663

0.441
  pilC Thermus thermophilus HB27

41.935

97.108

0.407
  pilC Vibrio campbellii strain DS40M4

39.604

97.349

0.386
  pilC Vibrio cholerae strain A1552

39.899

95.422

0.381

Multiple sequence alignment