Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   G4V52_RS12500 Genome accession   NZ_CP048905
Coordinates   2107926..2108576 (-) Length   216 a.a.
NCBI ID   WP_279380562.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SRRSH205     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2102926..2113576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V52_RS10990 - 2103900..2104282 (-) 383 Protein_2133 pilin -
  G4V52_RS12330 pilE 2104417..2104902 (-) 486 WP_125121586.1 pilin Machinery gene
  G4V52_RS11005 - 2104959..2105343 (-) 385 Protein_2135 pilin -
  G4V52_RS12335 pilE 2105478..2105963 (-) 486 WP_125121586.1 pilin Machinery gene
  G4V52_RS11020 - 2106020..2106367 (-) 348 Protein_2137 pilin -
  G4V52_RS11025 - 2106420..2106813 (-) 394 Protein_2138 pilin -
  G4V52_RS11030 - 2106948..2107390 (-) 443 Protein_2139 pilin -
  G4V52_RS12500 pilE 2107926..2108576 (-) 651 WP_279380562.1 pilin Machinery gene
  G4V52_RS11040 pilE 2108584..2108901 (-) 318 WP_003697861.1 pilin Machinery gene
  G4V52_RS11045 - 2109231..2109422 (+) 192 WP_014580443.1 hypothetical protein -
  G4V52_RS11050 - 2109486..2110175 (-) 690 WP_003696506.1 M48 family metallopeptidase -
  G4V52_RS11055 - 2110172..2110915 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -
  G4V52_RS11060 gmhB 2110945..2111508 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  G4V52_RS11065 - 2111651..2113303 (+) 1653 WP_203029625.1 LTA synthase family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23213.22 Da        Isoelectric Point: 9.8090

>NTDB_id=371393 G4V52_RS12500 WP_279380562.1 2107926..2108576(-) (pilE) [Neisseria gonorrhoeae strain SRRSH205]
MASSSSIIGKYVESVTVTNGVVTAKMKSDGVNKEIQGKKLSLWAKRQAGSVKWFCGQPVTRDKAVTDDAVKDVTGNDKIE
TKHLPSTCRDKSSAGCTKTPEYYLNHGIWPEDNDKAGVASSSSIKGKYVKEVKVENGVVTATMKSDGVNKEIKGKKLSLW
AKREDGSVKWFCGRPVKRDDAAAKAGTDDVKDAAADNGINTKHLPSTCRDKASDAT

Nucleotide


Download         Length: 651 bp        

>NTDB_id=371393 G4V52_RS12500 WP_279380562.1 2107926..2108576(-) (pilE) [Neisseria gonorrhoeae strain SRRSH205]
GTGGCATCTTCTTCATCAATCATAGGCAAATATGTTGAAAGCGTTACGGTCACAAACGGCGTCGTTACCGCCAAAATGAA
ATCAGACGGCGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGCCGGTTCGGTAAAATGGT
TCTGCGGACAGCCGGTTACGCGCGACAAAGCCGTCACCGACGACGCCGTCAAAGACGTCACCGGCAACGACAAAATCGAA
ACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATCTGCCGGTTGCACAAAAACACCCGAGTATTACCTGAATCACGG
CATATGGCCGGAAGACAACGACAAGGCCGGCGTGGCATCTTCTTCATCAATCAAAGGCAAATATGTTAAGGAAGTTAAAG
TCGAAAACGGCGTCGTTACCGCCACAATGAAATCAGACGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGG
GCCAAGCGTGAAGACGGTTCGGTAAAATGGTTCTGCGGACGGCCGGTTAAGCGCGACGACGCCGCCGCCAAAGCCGGCAC
CGACGACGTCAAAGACGCCGCCGCCGACAACGGCATCAACACCAAGCACCTGCCGTCAACCTGCCGCGATAAGGCATCTG
ATGCCACCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(3-89)

Pilin (bacterial filament) (Pilin)

(97-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

70.69

53.704

0.38