Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   G4V52_RS12330 Genome accession   NZ_CP048905
Coordinates   2104417..2104902 (-) Length   161 a.a.
NCBI ID   WP_125121586.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SRRSH205     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2099417..2109902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V52_RS12320 - 2100021..2100517 (-) 497 Protein_2128 pilin -
  G4V52_RS12495 - 2101333..2101451 (-) 119 Protein_2129 pilin -
  G4V52_RS10980 - 2101574..2101894 (-) 321 Protein_2130 pilin -
  G4V52_RS12325 - 2101955..2102338 (-) 384 Protein_2131 pilin -
  G4V52_RS10985 lpxC 2102483..2103406 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  G4V52_RS10990 - 2103900..2104282 (-) 383 Protein_2133 pilin -
  G4V52_RS12330 pilE 2104417..2104902 (-) 486 WP_125121586.1 pilin Machinery gene
  G4V52_RS11005 - 2104959..2105343 (-) 385 Protein_2135 pilin -
  G4V52_RS12335 pilE 2105478..2105963 (-) 486 WP_125121586.1 pilin Machinery gene
  G4V52_RS11020 - 2106020..2106367 (-) 348 Protein_2137 pilin -
  G4V52_RS11025 - 2106420..2106813 (-) 394 Protein_2138 pilin -
  G4V52_RS11030 - 2106948..2107390 (-) 443 Protein_2139 pilin -
  G4V52_RS12500 pilE 2107926..2108576 (-) 651 WP_279380562.1 pilin Machinery gene
  G4V52_RS11040 pilE 2108584..2108901 (-) 318 WP_003697861.1 pilin Machinery gene
  G4V52_RS11045 - 2109231..2109422 (+) 192 WP_014580443.1 hypothetical protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17314.41 Da        Isoelectric Point: 9.7934

>NTDB_id=371391 G4V52_RS12330 WP_125121586.1 2104417..2104902(-) (pilE) [Neisseria gonorrhoeae strain SRRSH205]
MASSPTDIKGKYVKSVTVAKGVVTAQMASTGVNKEIQGKKLSLWGRRENGSVKWFCGQPVTRTDKANDDVTDDATATMNS
SNVNKEIQGKKLSLWARRQDGSVKWFCGQPVKRDNANADTVTADATGNDGKIDTKHLPSTCRDAASAGCIETPPTAFYKN
T

Nucleotide


Download         Length: 486 bp        

>NTDB_id=371391 G4V52_RS12330 WP_125121586.1 2104417..2104902(-) (pilE) [Neisseria gonorrhoeae strain SRRSH205]
GTGGCATCCTCCCCCACCGACATCAAAGGCAAATATGTTAAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCCAAAT
GGCTTCAACCGGCGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAAT
GGTTCTGCGGACAGCCGGTTACGCGCACCGACAAAGCCAACGACGACGTTACCGACGACGCCACCGCCACAATGAATTCA
AGCAACGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTG
CGGACAGCCGGTTAAGCGCGACAACGCCAACGCCGACACCGTCACCGCCGACGCCACCGGCAACGACGGCAAAATCGACA
CCAAGCACCTGCCGTCAACCTGCCGCGACGCAGCATCTGCCGGTTGCATAGAAACACCACCTACGGCTTTCTATAAAAAT
ACCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(3-61)

Pilin (bacterial filament) (Pilin)

(72-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

49.66

91.304

0.453