Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   FLK62_RS09555 Genome accession   NZ_CP041334
Coordinates   1896170..1896511 (+) Length   113 a.a.
NCBI ID   WP_010786294.1    Uniprot ID   -
Organism   Glaesserella parasuis strain HPS412     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1896611..1897027 1896170..1896511 flank 100


Gene organization within MGE regions


Location: 1896170..1897027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLK62_RS09555 (FLK62_09680) comEA/comE1 1896170..1896511 (+) 342 WP_010786294.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12407.27 Da        Isoelectric Point: 9.8972

>NTDB_id=371284 FLK62_RS09555 WP_010786294.1 1896170..1896511(+) (comEA/comE1) [Glaesserella parasuis strain HPS412]
MKKLSRYTFSLLFGLFSATTFAEEKVTTSTEPTPVVMQQVAATQKVNANVVNINTATASEIQDKLVGIGAKKAQAIVEYR
EKNGKFLNVEQLTEVSGIGKATLEKNRDRIVIE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=371284 FLK62_RS09555 WP_010786294.1 1896170..1896511(+) (comEA/comE1) [Glaesserella parasuis strain HPS412]
ATGAAAAAACTTTCTCGTTACACATTCAGTCTTTTATTTGGGCTTTTCTCTGCAACAACATTTGCTGAAGAAAAAGTAAC
TACGTCAACAGAACCTACACCAGTAGTGATGCAACAAGTCGCAGCGACACAAAAAGTAAATGCGAATGTTGTAAATATCA
ATACTGCGACAGCCTCAGAAATCCAAGATAAGTTAGTAGGTATTGGAGCGAAAAAGGCTCAGGCAATTGTGGAATATCGT
GAGAAAAACGGTAAGTTTTTAAATGTTGAGCAGCTCACCGAAGTTTCAGGTATCGGGAAAGCGACACTTGAAAAAAACCG
AGATCGTATTGTGATTGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

98.23

100

0.982
  comE1/comEA Haemophilus influenzae Rd KW20

59.13

100

0.602

Multiple sequence alignment