Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | FLK62_RS03310 | Genome accession | NZ_CP041334 |
| Coordinates | 677492..677833 (+) | Length | 113 a.a. |
| NCBI ID | WP_235685072.1 | Uniprot ID | - |
| Organism | Glaesserella parasuis strain HPS412 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 672492..682833
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FLK62_RS03290 (FLK62_03320) | - | 673037..675592 (-) | 2556 | WP_035498541.1 | penicillin-binding protein 1A | - |
| FLK62_RS03295 (FLK62_03325) | comA | 675746..676423 (+) | 678 | WP_176443493.1 | competence protein ComA | Machinery gene |
| FLK62_RS03300 (FLK62_03330) | comB | 676399..676920 (+) | 522 | WP_176443494.1 | hypothetical protein | Machinery gene |
| FLK62_RS03305 (FLK62_03335) | comC | 676917..677447 (+) | 531 | WP_015940159.1 | hypothetical protein | Machinery gene |
| FLK62_RS03310 (FLK62_03340) | comD | 677492..677833 (+) | 342 | WP_235685072.1 | hypothetical protein | Machinery gene |
| FLK62_RS03315 (FLK62_03345) | comE | 677843..679105 (+) | 1263 | WP_005712502.1 | type IV pilus secretin PilQ | Machinery gene |
| FLK62_RS03320 (FLK62_03350) | nusB | 679184..679597 (+) | 414 | WP_010785952.1 | transcription antitermination factor NusB | - |
| FLK62_RS03325 (FLK62_03355) | thiL | 679606..680574 (+) | 969 | WP_176443495.1 | thiamine-phosphate kinase | - |
| FLK62_RS03330 (FLK62_03360) | - | 680577..681047 (+) | 471 | WP_005712497.1 | phosphatidylglycerophosphatase A | - |
| FLK62_RS03335 (FLK62_03365) | - | 681049..681678 (+) | 630 | WP_010785950.1 | LysE family transporter | - |
| FLK62_RS03340 (FLK62_03370) | trxA | 681975..682289 (+) | 315 | WP_005712493.1 | thioredoxin | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 13178.89 Da Isoelectric Point: 4.6931
>NTDB_id=371275 FLK62_RS03310 WP_235685072.1 677492..677833(+) (comD) [Glaesserella parasuis strain HPS412]
MADPFYAKENAQDQPQTAKDQNKTTACTPTEKVNEIHLTTDFDKLQLIGIIQIDDKIRAIFIDDKKQLIDLYPDDYLSHS
FIQIKEIDFKSVSYIDWQKTENCQSPKLFTSKF
MADPFYAKENAQDQPQTAKDQNKTTACTPTEKVNEIHLTTDFDKLQLIGIIQIDDKIRAIFIDDKKQLIDLYPDDYLSHS
FIQIKEIDFKSVSYIDWQKTENCQSPKLFTSKF
Nucleotide
Download Length: 342 bp
>NTDB_id=371275 FLK62_RS03310 WP_235685072.1 677492..677833(+) (comD) [Glaesserella parasuis strain HPS412]
ATGGCAGATCCTTTTTATGCCAAGGAAAATGCCCAAGATCAGCCACAAACGGCAAAAGATCAAAACAAAACGACCGCTTG
TACGCCAACAGAGAAGGTGAACGAAATTCACCTCACCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCG
ACGATAAAATCCGAGCGATTTTTATAGATGATAAAAAACAGCTTATAGATTTATACCCTGACGACTATTTAAGCCATTCC
TTTATTCAAATTAAAGAGATTGATTTTAAATCGGTTAGTTATATTGATTGGCAAAAAACAGAAAATTGCCAATCCCCTAA
ATTGTTTACTTCAAAATTTTAG
ATGGCAGATCCTTTTTATGCCAAGGAAAATGCCCAAGATCAGCCACAAACGGCAAAAGATCAAAACAAAACGACCGCTTG
TACGCCAACAGAGAAGGTGAACGAAATTCACCTCACCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCG
ACGATAAAATCCGAGCGATTTTTATAGATGATAAAAAACAGCTTATAGATTTATACCCTGACGACTATTTAAGCCATTCC
TTTATTCAAATTAAAGAGATTGATTTTAAATCGGTTAGTTATATTGATTGGCAAAAAACAGAAAATTGCCAATCCCCTAA
ATTGTTTACTTCAAAATTTTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Glaesserella parasuis strain SC1401 |
93.805 |
100 |
0.938 |