Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   FLK62_RS03295 Genome accession   NZ_CP041334
Coordinates   675746..676423 (+) Length   225 a.a.
NCBI ID   WP_176443493.1    Uniprot ID   A0A859IEH2
Organism   Glaesserella parasuis strain HPS412     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 670746..681423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLK62_RS03280 (FLK62_03310) aroB 671183..672271 (-) 1089 WP_005712516.1 3-dehydroquinate synthase -
  FLK62_RS03285 (FLK62_03315) aroK 672286..672807 (-) 522 WP_005712514.1 shikimate kinase AroK -
  FLK62_RS03290 (FLK62_03320) - 673037..675592 (-) 2556 WP_035498541.1 penicillin-binding protein 1A -
  FLK62_RS03295 (FLK62_03325) comA 675746..676423 (+) 678 WP_176443493.1 competence protein ComA Machinery gene
  FLK62_RS03300 (FLK62_03330) comB 676399..676920 (+) 522 WP_176443494.1 hypothetical protein Machinery gene
  FLK62_RS03305 (FLK62_03335) comC 676917..677447 (+) 531 WP_015940159.1 hypothetical protein Machinery gene
  FLK62_RS03310 (FLK62_03340) comD 677492..677833 (+) 342 WP_235685072.1 hypothetical protein Machinery gene
  FLK62_RS03315 (FLK62_03345) comE 677843..679105 (+) 1263 WP_005712502.1 type IV pilus secretin PilQ Machinery gene
  FLK62_RS03320 (FLK62_03350) nusB 679184..679597 (+) 414 WP_010785952.1 transcription antitermination factor NusB -
  FLK62_RS03325 (FLK62_03355) thiL 679606..680574 (+) 969 WP_176443495.1 thiamine-phosphate kinase -
  FLK62_RS03330 (FLK62_03360) - 680577..681047 (+) 471 WP_005712497.1 phosphatidylglycerophosphatase A -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 26248.27 Da        Isoelectric Point: 7.2701

>NTDB_id=371272 FLK62_RS03295 WP_176443493.1 675746..676423(+) (comA) [Glaesserella parasuis strain HPS412]
MGKFFQFRTTPQLKPIQVGFFWQENTACIVYFEQEQPHTFYFSSKVEADSFLQQFPFNYQLIQGISHQHIWRKTLILPEL
HSHLKQAEQIIRVLKQSLPLALSEVNIDYRITPLAESHLCQLSLYALRKSDSFDPTAILDCELYCLLRAVGFLTKMTETQ
ILEHSFHIQDKFIHFQNQRIIVEKQNNSTKPIIEVDGLPQAQHLPHFYPYLIALGASLWNGKASI

Nucleotide


Download         Length: 678 bp        

>NTDB_id=371272 FLK62_RS03295 WP_176443493.1 675746..676423(+) (comA) [Glaesserella parasuis strain HPS412]
ATGGGTAAATTCTTTCAATTTCGTACAACACCGCAACTCAAACCTATTCAAGTTGGCTTTTTCTGGCAAGAAAATACCGC
TTGTATCGTCTATTTTGAACAAGAACAACCTCACACCTTTTACTTTTCAAGCAAAGTAGAAGCGGATAGTTTCCTACAAC
AATTTCCCTTTAACTATCAGCTTATTCAAGGCATTTCTCATCAGCATATTTGGCGAAAAACCTTGATACTGCCAGAGCTA
CATTCCCATTTAAAACAAGCTGAGCAAATCATTCGTGTACTCAAACAGAGCCTACCTTTAGCTTTATCTGAAGTAAACAT
TGATTACCGTATCACCCCTTTAGCCGAGAGCCACCTCTGCCAGCTTAGTCTATATGCTCTAAGAAAAAGCGACAGCTTTG
ACCCAACGGCTATTTTAGATTGCGAACTCTACTGCCTACTACGAGCGGTAGGATTTCTGACAAAAATGACGGAAACGCAA
ATTCTTGAACACAGTTTCCACATTCAAGACAAATTTATTCACTTTCAAAATCAACGAATTATCGTCGAAAAGCAGAATAA
TAGCACCAAACCAATCATTGAAGTGGACGGCTTGCCCCAAGCTCAACATCTTCCCCACTTTTATCCTTATCTCATTGCAT
TAGGAGCAAGTTTATGGAATGGCAAGGCATCAATCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A859IEH2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Glaesserella parasuis strain SC1401

98.667

100

0.987

Multiple sequence alignment