Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   G4V54_RS03270 Genome accession   NZ_CP048896
Coordinates   636431..637675 (+) Length   414 a.a.
NCBI ID   WP_010357951.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SRRSH229     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 631431..642675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V54_RS03245 - 631940..633400 (-) 1461 WP_010360128.1 site-specific DNA-methyltransferase -
  G4V54_RS03250 - 633634..634146 (-) 513 WP_050154609.1 site-specific DNA-methyltransferase -
  G4V54_RS03255 truB 634364..635284 (-) 921 WP_010357946.1 tRNA pseudouridine(55) synthase TruB -
  G4V54_RS03260 - 635342..635866 (-) 525 WP_003688872.1 hypothetical protein -
  G4V54_RS03265 rbfA 635877..636248 (-) 372 WP_003692998.1 30S ribosome-binding factor RbfA -
  G4V54_RS03270 clpX 636431..637675 (+) 1245 WP_010357951.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  G4V54_RS03275 - 637782..638975 (-) 1194 WP_003688867.1 aspartate aminotransferase family protein -
  G4V54_RS03280 - 639084..639284 (-) 201 WP_235220171.1 hypothetical protein -
  G4V54_RS03285 - 639381..639881 (+) 501 WP_010357954.1 hypothetical protein -
  G4V54_RS03290 - 639966..640520 (+) 555 WP_003688863.1 hypothetical protein -
  G4V54_RS03295 - 640534..640734 (+) 201 WP_003688861.1 hypothetical protein -
  G4V54_RS03300 - 640865..640971 (+) 107 Protein_652 IS5/IS1182 family transposase -
  G4V54_RS03305 - 641085..642473 (-) 1389 WP_003697161.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44804.21 Da        Isoelectric Point: 4.9875

>NTDB_id=371135 G4V54_RS03270 WP_010357951.1 636431..637675(+) (clpX) [Neisseria gonorrhoeae strain SRRSH229]
MSNENRTCSFCGKSKSHAKHLIEGKNAYICDECVANCLEILYEGDNGGTPPENAGGEPEESGKLPTPAEIVANLDDYVIG
QGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQ
IITKLLGKCDFDVEKAQHGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINVDT
ANILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENAGITKLFGIVEPEDLIKFGLIPELIGRLPVIATLEELDEDA
LINILTEPKNALVKQYQALFGIENVGLEFEEGALRSIARQAMERKTGARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKA
VIEEGREPELVFES

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=371135 G4V54_RS03270 WP_010357951.1 636431..637675(+) (clpX) [Neisseria gonorrhoeae strain SRRSH229]
ATGTCCAACGAAAACCGTACCTGTTCCTTTTGCGGAAAATCCAAATCACACGCCAAACACCTGATTGAGGGCAAAAACGC
CTATATCTGCGACGAATGCGTCGCAAACTGCCTCGAAATATTGTACGAAGGCGACAACGGCGGCACGCCTCCGGAAAATG
CCGGAGGGGAGCCGGAAGAATCCGGCAAACTGCCCACGCCCGCCGAAATCGTTGCCAACCTCGACGATTATGTCATCGGG
CAGGGGCAGGCGAAAAAGGCGCTGGCGGTTGCGGTTTACAACCATTACAAACGCCTGCGCCACCCGAAAGCCGACGGCGG
TGTCGAATTGTCGAAATCCAACATCCTGCTTATCGGCCCGACCGGATCGGGTAAAACGCTGTTGGCGCAATCTTTGGCAC
GCAAACTGGACGTGCCGTTCGTGATGGCGGATGCGACCACGCTGACCGAAGCCGGCTATGTCGGCGAAGATGTCGAACAA
ATCATTACCAAACTGTTGGGCAAATGCGATTTCGATGTCGAAAAAGCCCAGCACGGCATTGTCTATATTGACGAAATTGA
CAAAATTTCGCGTAAAAGCGACAACCCGTCCATCACGCGCGACGTGTCCGGCGAAGGCGTGCAGCAAGCCTTGCTGAAAC
TGATTGAAGGTACGGTGGCAAGCGTTCCGCCCCAAGGCGGACGCAAGCATCCGAATCAGGAATTTATCAACGTTGATACC
GCCAACATCCTGTTTATCTGCGGCGGCGCGTTTGCAGGCTTGGAAAAAGTGATTCGCCAGCGCACCGAGAAAGGTGGTAT
CGGTTTCGGCGCGTCCGTTCACAGCAAGGACGAAAATGCCGGCATTACCAAGCTGTTCGGCATCGTCGAACCGGAAGATT
TAATCAAATTCGGCCTGATTCCGGAATTAATCGGACGTTTGCCCGTGATTGCAACTTTAGAAGAACTGGATGAGGACGCG
CTGATTAATATTTTAACCGAGCCGAAAAACGCTTTGGTCAAGCAGTATCAAGCCTTGTTCGGCATAGAAAACGTCGGGTT
GGAATTTGAAGAAGGCGCATTGCGTTCCATCGCGCGGCAGGCAATGGAACGCAAAACCGGCGCGCGCGGCCTGCGTTCCA
TCGTCGAACGCTGCCTGCTCGATACGATGTACCGCCTGCCCGATTTGCAAGGCTTGAAAAAAGTGGTGGTCGGCAAGGCA
GTCATCGAAGAGGGCAGGGAACCGGAATTGGTGTTCGAGTCCTGA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(112-310)

ClpX C4-type zinc finger (zf-C4_ClpX)

(7-42)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(316-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

55.797

100

0.558
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.964

99.758

0.548