Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | FK538_RS12445 | Genome accession | NZ_CP041295 |
| Coordinates | 2590787..2591422 (+) | Length | 211 a.a. |
| NCBI ID | WP_104483950.1 | Uniprot ID | - |
| Organism | Acinetobacter indicus strain 80-1-2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2585787..2596422
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FK538_RS12435 (FK538_12435) | - | 2587906..2588721 (-) | 816 | WP_168370742.1 | NAD(P)H-binding protein | - |
| FK538_RS12440 (FK538_12440) | recG | 2588755..2590800 (+) | 2046 | WP_104510033.1 | ATP-dependent DNA helicase RecG | - |
| FK538_RS12445 (FK538_12445) | comF | 2590787..2591422 (+) | 636 | WP_104483950.1 | ComF family protein | Machinery gene |
| FK538_RS12450 (FK538_12450) | - | 2591447..2591848 (-) | 402 | WP_104489521.1 | NUDIX hydrolase | - |
| FK538_RS12455 (FK538_12455) | - | 2591851..2592444 (-) | 594 | WP_005180318.1 | TIGR00730 family Rossman fold protein | - |
| FK538_RS12460 (FK538_12460) | - | 2592597..2593610 (+) | 1014 | WP_005180320.1 | CorA family divalent cation transporter | - |
| FK538_RS12465 (FK538_12465) | - | 2593788..2595092 (+) | 1305 | WP_032048861.1 | IS4 family transposase | - |
| FK538_RS12470 (FK538_12470) | - | 2595128..2595415 (-) | 288 | WP_005180321.1 | STAS domain-containing protein | - |
| FK538_RS12475 (FK538_12475) | - | 2595427..2596059 (-) | 633 | WP_104483948.1 | phospholipid-binding protein MlaC | - |
Sequence
Protein
Download Length: 211 a.a. Molecular weight: 24424.42 Da Isoelectric Point: 9.2130
>NTDB_id=371056 FK538_RS12445 WP_104483950.1 2590787..2591422(+) (comF) [Acinetobacter indicus strain 80-1-2]
MPMFKLLAHSRTLLQKLLPCQLCGSAAQQQYRVCADCLQQLPWLKANVYRQETEIQVACHYRYPVDRMIQQFKYEQQLHY
QSLLAGSLCELTYPRVQAIVPMPVATERLAERGYHHTLLLAQVLARHLQLPIWQPVVRRHQHSQKGLSRLERLENLDQQF
QLRPDTGRPYRRVLIVDDVVTTGSSIRALKQQLEQLGCHKVYAVCIASADG
MPMFKLLAHSRTLLQKLLPCQLCGSAAQQQYRVCADCLQQLPWLKANVYRQETEIQVACHYRYPVDRMIQQFKYEQQLHY
QSLLAGSLCELTYPRVQAIVPMPVATERLAERGYHHTLLLAQVLARHLQLPIWQPVVRRHQHSQKGLSRLERLENLDQQF
QLRPDTGRPYRRVLIVDDVVTTGSSIRALKQQLEQLGCHKVYAVCIASADG
Nucleotide
Download Length: 636 bp
>NTDB_id=371056 FK538_RS12445 WP_104483950.1 2590787..2591422(+) (comF) [Acinetobacter indicus strain 80-1-2]
ATGCCTATGTTTAAGCTGCTGGCGCATAGCCGTACGCTATTACAAAAATTACTGCCCTGCCAGCTCTGTGGCAGTGCGGC
CCAGCAGCAGTACCGGGTCTGTGCAGATTGCTTGCAGCAACTGCCATGGTTAAAAGCAAACGTCTACCGGCAGGAAACCG
AGATTCAGGTGGCCTGTCATTATCGTTATCCAGTCGACCGGATGATTCAGCAATTCAAATATGAGCAGCAACTGCATTAT
CAGTCTTTACTGGCGGGCAGCCTGTGTGAATTGACCTATCCACGGGTACAGGCCATTGTCCCGATGCCGGTGGCAACCGA
GCGACTGGCAGAGCGTGGCTATCATCATACCCTGCTGCTGGCTCAGGTGCTGGCACGCCATTTACAGCTACCAATCTGGC
AACCGGTTGTACGGCGCCATCAACACAGTCAAAAAGGCTTAAGCCGCTTGGAACGACTGGAAAATCTGGACCAGCAATTC
CAGCTACGGCCCGATACCGGCCGGCCCTATCGCCGGGTGTTAATTGTCGATGATGTGGTCACCACCGGCAGCTCAATTCG
TGCGCTAAAACAGCAGCTGGAGCAACTTGGCTGTCACAAGGTCTATGCGGTGTGTATTGCCAGTGCCGACGGATAA
ATGCCTATGTTTAAGCTGCTGGCGCATAGCCGTACGCTATTACAAAAATTACTGCCCTGCCAGCTCTGTGGCAGTGCGGC
CCAGCAGCAGTACCGGGTCTGTGCAGATTGCTTGCAGCAACTGCCATGGTTAAAAGCAAACGTCTACCGGCAGGAAACCG
AGATTCAGGTGGCCTGTCATTATCGTTATCCAGTCGACCGGATGATTCAGCAATTCAAATATGAGCAGCAACTGCATTAT
CAGTCTTTACTGGCGGGCAGCCTGTGTGAATTGACCTATCCACGGGTACAGGCCATTGTCCCGATGCCGGTGGCAACCGA
GCGACTGGCAGAGCGTGGCTATCATCATACCCTGCTGCTGGCTCAGGTGCTGGCACGCCATTTACAGCTACCAATCTGGC
AACCGGTTGTACGGCGCCATCAACACAGTCAAAAAGGCTTAAGCCGCTTGGAACGACTGGAAAATCTGGACCAGCAATTC
CAGCTACGGCCCGATACCGGCCGGCCCTATCGCCGGGTGTTAATTGTCGATGATGTGGTCACCACCGGCAGCTCAATTCG
TGCGCTAAAACAGCAGCTGGAGCAACTTGGCTGTCACAAGGTCTATGCGGTGTGTATTGCCAGTGCCGACGGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Acinetobacter baumannii D1279779 |
55.502 |
99.052 |
0.55 |
| comF | Acinetobacter baumannii strain A118 |
55.502 |
99.052 |
0.55 |