Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | FK538_RS06195 | Genome accession | NZ_CP041295 |
| Coordinates | 1282557..1282901 (+) | Length | 114 a.a. |
| NCBI ID | WP_242898261.1 | Uniprot ID | - |
| Organism | Acinetobacter indicus strain 80-1-2 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1277557..1287901
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FK538_RS06165 (FK538_06180) | kdsB | 1278249..1279013 (+) | 765 | WP_075174513.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| FK538_RS06170 (FK538_06185) | - | 1279022..1280005 (+) | 984 | WP_045795758.1 | DNA polymerase III subunit delta' | - |
| FK538_RS06175 (FK538_06190) | - | 1280017..1280358 (+) | 342 | WP_005177501.1 | PilZ domain-containing protein | - |
| FK538_RS06180 (FK538_06195) | - | 1280388..1281161 (+) | 774 | WP_005177502.1 | TatD family hydrolase | - |
| FK538_RS06185 (FK538_06200) | - | 1281222..1281836 (+) | 615 | WP_075166784.1 | TetR/AcrR family transcriptional regulator | - |
| FK538_RS06190 (FK538_06205) | - | 1281842..1282414 (+) | 573 | WP_075174514.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| FK538_RS06195 (FK538_06210) | xcpV | 1282557..1282901 (+) | 345 | WP_242898261.1 | type II secretion system protein | Machinery gene |
| FK538_RS06200 (FK538_06215) | xcpW | 1282898..1283533 (+) | 636 | WP_104489735.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| FK538_RS06205 (FK538_06220) | gspK | 1283566..1284513 (+) | 948 | WP_104487765.1 | type II secretion system minor pseudopilin GspK | - |
| FK538_RS06210 (FK538_06225) | - | 1284662..1285258 (+) | 597 | WP_005177512.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| FK538_RS06215 (FK538_06230) | ung | 1285300..1286013 (+) | 714 | WP_005177514.1 | uracil-DNA glycosylase | - |
| FK538_RS06220 (FK538_06235) | - | 1286010..1287134 (+) | 1125 | WP_005177517.1 | enoyl-CoA hydratase/isomerase family protein | - |
| FK538_RS06225 (FK538_06240) | tadA | 1287138..1287659 (+) | 522 | WP_075166790.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 114 a.a. Molecular weight: 12600.34 Da Isoelectric Point: 6.2041
>NTDB_id=371043 FK538_RS06195 WP_242898261.1 1282557..1282901(+) (xcpV) [Acinetobacter indicus strain 80-1-2]
MVALAIFATAAMALTQVAMQYTQSTSHAILRTKAQFVALNEQALMEIQQDWLTGTQSKQVTLQGESWQIDKSAQPTISPN
VQRVEVQVSLFNPDTGQVEAGITHLVFFNHRVAQ
MVALAIFATAAMALTQVAMQYTQSTSHAILRTKAQFVALNEQALMEIQQDWLTGTQSKQVTLQGESWQIDKSAQPTISPN
VQRVEVQVSLFNPDTGQVEAGITHLVFFNHRVAQ
Nucleotide
Download Length: 345 bp
>NTDB_id=371043 FK538_RS06195 WP_242898261.1 1282557..1282901(+) (xcpV) [Acinetobacter indicus strain 80-1-2]
ATGGTGGCACTGGCCATTTTCGCTACAGCCGCCATGGCACTGACCCAAGTGGCCATGCAATATACCCAGTCGACCTCTCA
TGCCATTTTAAGAACCAAAGCACAGTTTGTGGCCTTAAATGAACAGGCTCTAATGGAAATCCAACAGGACTGGCTGACGG
GTACGCAATCAAAACAGGTTACCCTGCAAGGTGAAAGCTGGCAAATTGATAAAAGCGCACAGCCGACCATTAGCCCGAAT
GTGCAGCGGGTAGAAGTGCAGGTCAGCTTATTTAACCCCGATACCGGTCAGGTTGAAGCCGGCATCACCCATTTGGTGTT
TTTTAATCATCGGGTGGCGCAATGA
ATGGTGGCACTGGCCATTTTCGCTACAGCCGCCATGGCACTGACCCAAGTGGCCATGCAATATACCCAGTCGACCTCTCA
TGCCATTTTAAGAACCAAAGCACAGTTTGTGGCCTTAAATGAACAGGCTCTAATGGAAATCCAACAGGACTGGCTGACGG
GTACGCAATCAAAACAGGTTACCCTGCAAGGTGAAAGCTGGCAAATTGATAAAAGCGCACAGCCGACCATTAGCCCGAAT
GTGCAGCGGGTAGAAGTGCAGGTCAGCTTATTTAACCCCGATACCGGTCAGGTTGAAGCCGGCATCACCCATTTGGTGTT
TTTTAATCATCGGGTGGCGCAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
76.786 |
98.246 |
0.754 |