Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ECL_RS20135 Genome accession   NC_014121
Coordinates   4139198..4140256 (-) Length   352 a.a.
NCBI ID   WP_013098438.1    Uniprot ID   A0A851G9M9
Organism   Enterobacter cloacae subsp. cloacae ATCC 13047     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4134198..4145256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECL_RS20120 (ECL_04030) csrA 4135443..4135628 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  ECL_RS20125 (ECL_04031) alaS 4135870..4138497 (-) 2628 WP_013098436.1 alanine--tRNA ligase -
  ECL_RS20130 (ECL_04032) recX 4138629..4139129 (-) 501 WP_013098437.1 recombination regulator RecX -
  ECL_RS20135 (ECL_04033) recA 4139198..4140256 (-) 1059 WP_013098438.1 recombinase RecA Machinery gene
  ECL_RS20140 (ECL_04034) pncC 4140346..4140843 (-) 498 WP_013098439.1 nicotinamide-nucleotide amidase -
  ECL_RS20145 (ECL_04035) - 4140974..4141852 (-) 879 WP_029883886.1 metal ABC transporter substrate-binding protein -
  ECL_RS20150 (ECL_04036) - 4141867..4142727 (-) 861 WP_013098441.1 metal ABC transporter permease -
  ECL_RS20155 (ECL_04037) - 4142724..4143377 (-) 654 WP_013098442.1 metal ABC transporter ATP-binding protein -
  ECL_RS20160 (ECL_04038) mltB 4143620..4144720 (-) 1101 WP_169746046.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37866.31 Da        Isoelectric Point: 4.8134

>NTDB_id=37103 ECL_RS20135 WP_013098438.1 4139198..4140256(-) (recA) [Enterobacter cloacae subsp. cloacae ATCC 13047]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRELLLNNQDSKPDFVVDGADAEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=37103 ECL_RS20135 WP_013098438.1 4139198..4140256(-) (recA) [Enterobacter cloacae subsp. cloacae ATCC 13047]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTACCATGGATGTGGAAACGATCTCCACCGGTTCGCTTTCTCTGGATATCGCGCTGGGCG
CGGGCGGCCTGCCAATGGGCCGTATCGTAGAGATCTACGGGCCAGAATCCTCCGGTAAAACCACCCTGACGCTGCAGGTG
ATTGCCGCGGCGCAGCGCGAAGGTAAAACCTGTGCCTTTATCGATGCCGAGCACGCGCTGGACCCTGTTTATGCTCGTAA
GCTGGGCGTGGATATCGATAACCTGCTGTGTTCTCAGCCAGACACGGGTGAACAGGCGCTGGAGATTTGTGACGCGCTGG
CGCGTTCCGGTGCGGTTGACGTTATCGTGGTCGACTCCGTTGCTGCGCTGACGCCAAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCAATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
TACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGCGTAATGTTCGGTAACCCGGAAACCACCACCGGTGGTA
ACGCGCTGAAATTCTATGCTTCTGTCCGTCTGGATATCCGCCGTATCGGCGCGGTGAAAGAGGGTGAGAACGTAGTGGGG
AGTGAAACCCGCGTGAAGGTCGTGAAGAACAAGATCGCCGCGCCGTTCAAACAGGCTGAATTCCAGATCCTCTACGGTGA
AGGTATCAACTTCTTCGGCGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATCGAAAAAGCGGGCGCATGGTACAGCT
ACAACGGCGATAAAATTGGTCAGGGTAAAGCGAATGCGATCTCCTGGCTGAAAGAGAACCCGGCTGCAGCGAAAGAGATC
GAGAAGAAAGTGCGTGAGCTTCTGCTGAACAACCAGGACTCTAAACCTGATTTCGTGGTTGATGGTGCGGATGCTGAAGA
AACTAACGAAGACTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A851G9M9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

85.196

94.034

0.801
  recA Vibrio cholerae O1 biovar El Tor strain E7946

85.196

94.034

0.801
  recA Pseudomonas stutzeri DSM 10701

72.832

98.295

0.716
  recA Acinetobacter baumannii D1279779

74.924

92.898

0.696
  recA Acinetobacter baylyi ADP1

74.39

93.182

0.693
  recA Glaesserella parasuis strain SC1401

68.678

98.864

0.679
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae strain FA1090

69.632

92.614

0.645
  recA Ralstonia pseudosolanacearum GMI1000

70.74

88.352

0.625
  recA Helicobacter pylori strain NCTC11637

61.721

95.739

0.591
  recA Helicobacter pylori 26695

61.424

95.739

0.588
  recA Streptococcus mitis SK321

59.026

99.148

0.585
  recA Streptococcus pneumoniae TIGR4

62.848

91.761

0.577
  recA Streptococcus pneumoniae Rx1

62.848

91.761

0.577
  recA Streptococcus pneumoniae D39

62.848

91.761

0.577
  recA Streptococcus pneumoniae R6

62.848

91.761

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

91.193

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.037

92.045

0.571
  recA Streptococcus mitis NCTC 12261

62.229

91.761

0.571
  recA Streptococcus pyogenes NZ131

61.846

92.33

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.36

94.602

0.571
  recA Lactococcus lactis subsp. cremoris KW2

61.92

91.761

0.568
  recA Streptococcus mutans UA159

61.538

92.33

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.33

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

91.193

0.557

Multiple sequence alignment