Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   FK538_RS00960 Genome accession   NZ_CP041295
Coordinates   194535..196103 (-) Length   522 a.a.
NCBI ID   WP_168370313.1    Uniprot ID   -
Organism   Acinetobacter indicus strain 80-1-2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 189535..201103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FK538_RS00945 (FK538_00950) gpmI 190351..191898 (+) 1548 WP_005181570.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  FK538_RS00950 (FK538_00955) - 191922..193091 (+) 1170 WP_005181572.1 S41 family peptidase -
  FK538_RS00955 (FK538_00960) pilR 193108..194463 (-) 1356 WP_171526345.1 sigma-54-dependent transcriptional regulator Regulator
  FK538_RS00960 (FK538_00965) pilS 194535..196103 (-) 1569 WP_168370313.1 sensor histidine kinase Regulator
  FK538_RS00965 (FK538_00970) - 196118..196753 (-) 636 WP_005181577.1 response regulator -
  FK538_RS00970 (FK538_00975) - 196971..198053 (+) 1083 WP_127799456.1 serine hydrolase -
  FK538_RS00975 (FK538_00980) thrC 198146..199291 (-) 1146 WP_005181581.1 threonine synthase -
  FK538_RS00980 (FK538_00985) - 199349..200653 (-) 1305 WP_016659702.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 60049.69 Da        Isoelectric Point: 6.9237

>NTDB_id=371029 FK538_RS00960 WP_168370313.1 194535..196103(-) (pilS) [Acinetobacter indicus strain 80-1-2]
MDIRRTQAELNQYHLGLWYGAYRLIIAFCLLLIYLLTTQTLNHDYQHPRLYAASLVLYFIFSCAQLLYFRYVRHRIPLQL
TLIFSVDVLVLSSLTFALDGPSLHLSLLFVIAIFAATLLLEKSKALFITLVAMICVTYQHFVGTLLDFSSLDRIGQSTLL
SFLFFIIYRFGQIAVRRFQILEHLNFSQSLELNRLKNINRYILEQTDMGYLVLDENCHIMVSNPAACHLLGINPLYAFDK
YPLYKVQPDLFQLLQFDQLSNGEKFQFESQLSHFLIQIQVQKLVVPQQTLTLLVLQDARQINQRVQQLKLAALGQLSASI
AHEIRNPLAAIVQANHLLAGSDTDQQQMLSQMIDKQSQRIDKIIDDTLSMVKNKETTPVQIDLVRFIPQLIQDDLADLAS
QIQVSQPEPLQILFDESQLRQVLINLIRNAQRHNAPDHPIELQLYRQQDTIYMDVKDYGSGVASHDIRYLFQPFFSTEIS
GTGLGLYLSHSFCEANRAKLRYVEQKQGACFRIECSPVDVNK

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=371029 FK538_RS00960 WP_168370313.1 194535..196103(-) (pilS) [Acinetobacter indicus strain 80-1-2]
ATGGATATCCGCCGTACGCAAGCTGAACTGAACCAGTACCATCTCGGGCTATGGTACGGGGCGTATCGGCTGATAATTGC
CTTCTGTTTGCTGCTGATTTATTTACTCACCACTCAAACTCTCAATCATGATTATCAGCATCCACGGCTGTATGCCGCCA
GTCTGGTGCTGTATTTTATTTTTAGCTGTGCCCAGCTGCTGTATTTTCGCTATGTCCGGCACAGGATTCCGCTACAACTC
ACGCTGATTTTCAGTGTTGATGTACTGGTGCTCAGCAGCCTGACCTTTGCGCTGGATGGACCGAGCCTGCATTTAAGCCT
GCTGTTTGTGATTGCGATTTTCGCCGCGACGTTATTGCTGGAAAAAAGCAAGGCGCTGTTCATTACCCTGGTGGCAATGA
TTTGTGTCACCTATCAGCATTTTGTTGGCACATTACTGGATTTTTCCTCTCTGGATCGCATCGGGCAAAGTACCCTGCTC
TCGTTCCTGTTTTTTATTATTTACCGTTTTGGCCAGATTGCCGTCCGCCGTTTCCAGATTCTGGAGCACCTGAACTTTTC
CCAATCACTGGAACTGAACCGGCTAAAGAATATTAACCGCTATATTCTGGAACAGACCGATATGGGCTATCTGGTGCTGG
ATGAAAACTGCCATATTATGGTCAGTAATCCGGCCGCCTGCCATTTGCTGGGTATTAATCCGCTGTATGCTTTCGACAAA
TATCCACTGTATAAAGTACAGCCCGACCTGTTTCAATTATTACAGTTTGACCAGCTCTCTAACGGCGAAAAATTCCAGTT
TGAATCGCAGCTCAGTCATTTCCTGATCCAGATTCAGGTACAAAAGCTGGTGGTGCCGCAGCAGACCTTAACCTTGCTGG
TGCTGCAGGATGCACGGCAAATCAACCAGCGTGTGCAGCAACTGAAACTGGCAGCACTGGGCCAGCTTTCGGCCAGTATT
GCCCATGAAATCCGTAATCCGCTGGCGGCCATTGTCCAGGCCAATCACCTGCTGGCTGGCAGCGATACCGATCAGCAGCA
GATGCTGAGCCAGATGATTGACAAGCAGTCGCAGCGCATTGACAAGATCATTGATGACACCCTGAGCATGGTGAAAAATA
AGGAAACCACACCGGTGCAGATTGATCTGGTGCGTTTTATTCCGCAGCTGATCCAGGATGATCTGGCCGATCTGGCCAGC
CAGATTCAGGTCAGCCAGCCCGAACCTCTGCAAATTCTGTTTGATGAATCCCAGCTGCGTCAGGTGCTGATTAACCTGAT
CCGTAATGCCCAGCGCCACAATGCGCCGGATCATCCGATTGAACTGCAACTTTATCGCCAGCAGGACACGATCTATATGG
ATGTCAAAGATTATGGCAGCGGCGTGGCTTCACATGATATTCGCTACCTGTTTCAACCATTTTTTAGTACCGAAATTAGT
GGAACTGGTTTAGGATTATACTTATCACATAGTTTCTGCGAGGCCAATCGGGCCAAGTTGCGCTATGTAGAACAAAAACA
AGGAGCATGTTTCAGGATTGAATGCTCACCTGTTGACGTAAATAAATAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.406

96.743

0.575

Multiple sequence alignment