Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FK537_RS09730 Genome accession   NZ_CP041291
Coordinates   1937850..1938485 (-) Length   211 a.a.
NCBI ID   WP_104489522.1    Uniprot ID   -
Organism   Acinetobacter indicus strain 94-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1932850..1943485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FK537_RS09695 (FK537_09765) mlaE 1933126..1933905 (+) 780 WP_005180328.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  FK537_RS09700 (FK537_09770) - 1933905..1934576 (+) 672 WP_005180325.1 outer membrane lipid asymmetry maintenance protein MlaD -
  FK537_RS09705 (FK537_09775) - 1934595..1935227 (+) 633 WP_005180322.1 phospholipid-binding protein MlaC -
  FK537_RS09710 (FK537_09780) - 1935239..1935526 (+) 288 WP_045795311.1 STAS domain-containing protein -
  FK537_RS09715 (FK537_09785) - 1935664..1936677 (-) 1014 WP_005180320.1 CorA family divalent cation transporter -
  FK537_RS09720 (FK537_09790) - 1936830..1937423 (+) 594 WP_005180318.1 TIGR00730 family Rossman fold protein -
  FK537_RS09725 (FK537_09795) - 1937426..1937827 (+) 402 WP_104489521.1 NUDIX hydrolase -
  FK537_RS09730 (FK537_09800) comF 1937850..1938485 (-) 636 WP_104489522.1 ComF family protein Machinery gene
  FK537_RS09735 (FK537_09805) recG 1938472..1940517 (-) 2046 WP_168369973.1 ATP-dependent DNA helicase RecG -
  FK537_RS09740 (FK537_09810) - 1940551..1941366 (+) 816 WP_168369974.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24404.44 Da        Isoelectric Point: 9.2130

>NTDB_id=371011 FK537_RS09730 WP_104489522.1 1937850..1938485(-) (comF) [Acinetobacter indicus strain 94-2]
MPMFKLLAHSRTLLQKLLPCQLCGSAAQQQYRVCADCLQQLPWLKANVYRQETEIQVACHYRYPVDRMIQQFKYEQQLHY
QPLLAGSLCELTYPRVQAIVPMPVAAERLAERGYHHTLLLAQVLARHLQLPIWQPVVRRHQHSQKGLSRLERLENLDQQF
QLRPDTGRPYRRVLIVDDVVTTGSSIRALKQQLEQLGCHKVYAVCIASADG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=371011 FK537_RS09730 WP_104489522.1 1937850..1938485(-) (comF) [Acinetobacter indicus strain 94-2]
ATGCCTATGTTTAAGCTGCTGGCGCATAGCCGTACGCTATTACAAAAATTACTGCCCTGCCAGCTCTGTGGCAGTGCGGC
CCAGCAGCAGTACCGGGTCTGTGCAGATTGCTTGCAGCAACTGCCATGGTTAAAAGCAAACGTCTACCGGCAGGAAACCG
AGATTCAGGTGGCCTGTCATTATCGTTATCCAGTCGACCGGATGATTCAGCAATTCAAATATGAGCAGCAATTGCATTAT
CAGCCTTTACTGGCGGGCAGCCTGTGTGAATTGACCTATCCACGGGTACAGGCCATTGTCCCGATGCCGGTGGCAGCCGA
GCGACTGGCAGAGCGTGGTTATCATCATACCCTGCTGCTGGCTCAGGTGCTGGCACGCCATTTACAGCTACCAATCTGGC
AACCGGTTGTACGGCGCCATCAACACAGTCAAAAAGGCTTAAGCCGGCTGGAACGACTGGAAAATCTGGACCAGCAATTC
CAGCTACGGCCCGATACCGGCCGGCCCTATCGCCGGGTGTTAATTGTCGATGATGTGGTCACCACCGGCAGCTCAATTCG
TGCGCTAAAACAGCAGCTGGAGCAACTTGGCTGTCACAAGGTCTATGCGGTGTGTATTGCCAGTGCCGACGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

55.502

99.052

0.55
  comF Acinetobacter baumannii strain A118

55.502

99.052

0.55

Multiple sequence alignment