Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   FK537_RS07200 Genome accession   NZ_CP041291
Coordinates   1416481..1417638 (+) Length   385 a.a.
NCBI ID   WP_163169918.1    Uniprot ID   -
Organism   Acinetobacter indicus strain 94-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1411481..1422638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FK537_RS07185 (FK537_07260) - 1413217..1415250 (-) 2034 WP_168369816.1 TonB-dependent copper receptor -
  FK537_RS07190 (FK537_07265) - 1415324..1415746 (-) 423 WP_016658991.1 DUF2946 family protein -
  FK537_RS07195 (FK537_07270) def 1415837..1416361 (-) 525 WP_005181462.1 peptide deformylase -
  FK537_RS07200 (FK537_07275) tsaP 1416481..1417638 (+) 1158 WP_163169918.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  FK537_RS07205 (FK537_07280) dprA 1417655..1418797 (+) 1143 WP_005181456.1 DNA-processing protein DprA Machinery gene
  FK537_RS07210 (FK537_07285) - 1418842..1419408 (+) 567 WP_005181449.1 L-threonylcarbamoyladenylate synthase -
  FK537_RS07215 (FK537_07295) - 1419789..1420700 (-) 912 WP_005181447.1 DMT family transporter -
  FK537_RS07220 (FK537_07300) - 1421029..1421571 (+) 543 WP_005181445.1 glutathione peroxidase -
  FK537_RS07225 (FK537_07305) - 1421756..1422364 (+) 609 WP_163146337.1 hypothetical protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 42503.51 Da        Isoelectric Point: 8.8330

>NTDB_id=371000 FK537_RS07200 WP_163169918.1 1416481..1417638(+) (tsaP) [Acinetobacter indicus strain 94-2]
MKKVLKGTSSFRALGLKQQALALAVCFSFGVGAVSTVQAAPARNINPPTLQANAPNVYVVKKGDTLWDISKKFLQNPLRW
REIWASNKHVKNPHWIFPGDRLLMCTYDGRPIIGKDEGDGCEGIIRRYTGNTTSLQPQIRVESLNNTIPVIPLEYIQHWL
ERTSIIAPESLQQTPYILGTADQRVLAAKGQNVYARGQGLQVGQRYAVYREGEPYIFTDANGKKYNAGLELTQVASGIAV
RGENDITTLELTDTYNAEVRRGDRVLPEYDPMLPTLFYPTNAEHIAADGQVVRVMGSIGTAAKHSVVTIDRGQAHGVQSG
HVFAVTQKGEVVTDPKTRERVQLPGERIGYAMVFKTFDQLSYAYILDSELPIKVGAGIQPPIIED

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=371000 FK537_RS07200 WP_163169918.1 1416481..1417638(+) (tsaP) [Acinetobacter indicus strain 94-2]
ATGAAAAAGGTTTTGAAGGGCACATCTTCTTTTCGTGCCTTGGGGTTAAAACAGCAGGCGCTGGCACTTGCTGTCTGTTT
CAGTTTTGGGGTGGGCGCAGTCAGTACTGTACAGGCCGCACCGGCACGCAATATCAACCCACCGACCTTACAGGCCAATG
CACCAAATGTGTATGTGGTGAAAAAAGGCGATACGCTGTGGGATATTTCCAAGAAGTTTCTGCAAAACCCGCTGCGCTGG
CGTGAAATCTGGGCCAGCAACAAGCACGTGAAAAATCCGCACTGGATTTTCCCGGGAGATCGCCTGCTGATGTGTACCTA
TGATGGCCGCCCGATCATTGGTAAAGATGAAGGTGATGGCTGTGAAGGTATTATCCGTCGTTATACCGGTAACACCACCA
GCCTGCAGCCGCAAATCCGGGTCGAGTCACTCAACAATACCATTCCGGTGATTCCACTGGAGTACATCCAGCACTGGCTG
GAACGTACCAGCATTATTGCCCCTGAATCTTTGCAACAGACGCCTTATATTTTAGGCACGGCGGATCAGCGTGTCCTGGC
GGCCAAAGGCCAGAATGTCTATGCCCGCGGTCAGGGTCTGCAAGTTGGCCAGCGTTATGCGGTGTATCGTGAAGGCGAAC
CGTATATCTTCACCGATGCCAACGGTAAAAAATACAATGCCGGTCTGGAGCTGACTCAGGTTGCATCCGGTATTGCAGTA
CGCGGTGAAAATGATATTACCACCCTGGAACTGACCGATACCTACAATGCCGAAGTGCGTCGTGGCGATCGTGTGCTGCC
AGAATATGACCCGATGTTACCAACCCTATTCTACCCGACCAATGCCGAACACATTGCAGCAGATGGCCAGGTGGTACGTG
TGATGGGTTCAATTGGGACCGCGGCTAAACACAGTGTGGTCACCATTGACCGTGGTCAGGCGCACGGCGTGCAATCCGGT
CATGTATTTGCTGTAACTCAAAAAGGCGAAGTGGTCACCGATCCGAAAACCCGTGAACGGGTGCAGCTGCCAGGCGAGCG
TATTGGCTATGCCATGGTCTTTAAAACCTTTGACCAGCTCAGCTATGCCTATATTCTGGACAGCGAACTACCAATTAAAG
TCGGGGCCGGTATTCAGCCACCGATTATAGAAGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

66.234

100

0.662

Multiple sequence alignment