Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AbD4_RS09555 Genome accession   NZ_CP048849
Coordinates   2000559..2001155 (+) Length   198 a.a.
NCBI ID   WP_000490551.1    Uniprot ID   A0AA36KBA4
Organism   Acinetobacter baumannii strain D4     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1995559..2006155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AbD4_RS09525 (AbD4_01916) - 1995738..1996112 (+) 375 WP_000800035.1 TonB C-terminal domain-containing protein -
  AbD4_RS09530 (AbD4_01917) - 1996287..1997054 (+) 768 WP_000917650.1 methyltransferase domain-containing protein -
  AbD4_RS09535 (AbD4_01918) - 1997135..1998220 (-) 1086 WP_000825830.1 alpha/beta fold hydrolase -
  AbD4_RS09540 (AbD4_01919) - 1998354..1999541 (+) 1188 WP_001076389.1 O-succinylhomoserine sulfhydrylase -
  AbD4_RS09545 (AbD4_01920) - 1999718..1999954 (+) 237 WP_000917295.1 hypothetical protein -
  AbD4_RS09550 (AbD4_01921) - 2000220..2000549 (+) 330 WP_001024697.1 YbaB/EbfC family nucleoid-associated protein -
  AbD4_RS09555 (AbD4_01922) recR 2000559..2001155 (+) 597 WP_000490551.1 recombination mediator RecR Machinery gene
  AbD4_RS09560 (AbD4_01923) - 2001460..2002584 (+) 1125 WP_000486120.1 ribonuclease D -
  AbD4_RS09565 (AbD4_01924) - 2003087..2003353 (+) 267 WP_000183702.1 hypothetical protein -
  AbD4_RS09570 (AbD4_01925) - 2003484..2003825 (+) 342 WP_001985689.1 hypothetical protein -
  AbD4_RS09575 (AbD4_01926) - 2003897..2004061 (-) 165 WP_000086293.1 hypothetical protein -
  AbD4_RS09580 (AbD4_01927) - 2004548..2004808 (+) 261 WP_188146221.1 YcgL domain-containing protein -
  AbD4_RS09585 (AbD4_01928) - 2004801..2005187 (+) 387 WP_001206390.1 hypothetical protein -
  AbD4_RS09590 (AbD4_01929) - 2005217..2006068 (+) 852 WP_001271636.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21801.90 Da        Isoelectric Point: 6.1660

>NTDB_id=370997 AbD4_RS09555 WP_000490551.1 2000559..2001155(+) (recR) [Acinetobacter baumannii strain D4]
MFSDRFEQLVQALRILPSVGPKSAQRMALHLLMKNREGAFALAHALHEASSYIHECSVCHSLTEHEICDICASTERDDQL
LCVVESPADVMAIEQSGSFRGKYHVLGGHLSPLDGIGPEEIGIPYLIQRLSQGTIEEVILATNATVEGQATAHYLVEATK
HLPIHMTRIAQGVPQGGELEYVDSHTLSQAVHNRMRMK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=370997 AbD4_RS09555 WP_000490551.1 2000559..2001155(+) (recR) [Acinetobacter baumannii strain D4]
GTGTTTAGTGATAGATTTGAACAACTCGTTCAAGCTTTACGTATTTTGCCTAGCGTTGGACCGAAGTCGGCCCAACGTAT
GGCTTTACATCTTTTGATGAAAAATCGTGAAGGTGCATTTGCTTTAGCACATGCTCTACATGAAGCATCAAGTTATATTC
ATGAATGTAGTGTTTGCCACTCTTTAACAGAGCATGAAATTTGTGATATTTGCGCTTCAACAGAAAGAGATGATCAATTG
CTTTGTGTAGTTGAGTCTCCGGCAGATGTTATGGCAATCGAGCAAAGTGGTAGTTTTCGTGGCAAATACCATGTGTTGGG
TGGGCATCTTTCTCCATTAGATGGAATCGGGCCAGAAGAAATAGGTATTCCTTATCTAATCCAACGTTTAAGCCAAGGTA
CGATCGAAGAAGTCATTTTGGCAACTAATGCTACTGTGGAAGGTCAGGCGACAGCGCATTATTTGGTTGAAGCGACGAAG
CATTTACCTATTCACATGACACGTATTGCTCAAGGCGTACCACAAGGTGGCGAGCTTGAATATGTGGATAGTCATACCTT
AAGTCAGGCTGTTCATAACCGTATGCGTATGAAATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36KBA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.538

93.939

0.475
  recR Bacillus subtilis subsp. subtilis str. 168

43.523

97.475

0.424

Multiple sequence alignment