Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FG480_RS05030 Genome accession   NZ_CP041280
Coordinates   964969..965544 (-) Length   191 a.a.
NCBI ID   WP_011543464.1    Uniprot ID   A0AAV5PJF2
Organism   Lactobacillus delbrueckii subsp. bulgaricus strain KLDS1.1011     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 959969..970544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FG480_RS05010 (FG480_05010) dnaB 960672..962042 (-) 1371 WP_003623658.1 replicative DNA helicase -
  FG480_RS05015 (FG480_05015) rplI 962066..962521 (-) 456 WP_003623657.1 50S ribosomal protein L9 -
  FG480_RS05020 (FG480_05020) - 962544..964565 (-) 2022 WP_035175883.1 DHH family phosphoesterase -
  FG480_RS05025 (FG480_05025) rpsR 964706..964942 (-) 237 WP_003622127.1 30S ribosomal protein S18 -
  FG480_RS05030 (FG480_05030) ssb 964969..965544 (-) 576 WP_011543464.1 single-stranded DNA-binding protein Machinery gene
  FG480_RS05035 (FG480_05035) rpsF 965585..965878 (-) 294 WP_003612647.1 30S ribosomal protein S6 -
  FG480_RS05040 (FG480_05040) gyrA 966094..968565 (-) 2472 WP_003623653.1 DNA gyrase subunit A -
  FG480_RS05045 (FG480_05045) gyrB 968578..970539 (-) 1962 WP_003623650.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20582.25 Da        Isoelectric Point: 4.6437

>NTDB_id=370947 FG480_RS05030 WP_011543464.1 964969..965544(-) (ssb) [Lactobacillus delbrueckii subsp. bulgaricus strain KLDS1.1011]
MINNVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNASGQREADFISCVIWRKAAENFCNFTSKGSLVGIQGRIQTR
NYDNKDGQRVYVTEVLVDNFSLLESRRERESRQQNSGFGGQGQSQNTGFNTGFGGGSGYANNAFGSPAQSNGPANAGFNE
DNKKDAGGDTNTNPFDSSDDAINVSNDDLPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=370947 FG480_RS05030 WP_011543464.1 964969..965544(-) (ssb) [Lactobacillus delbrueckii subsp. bulgaricus strain KLDS1.1011]
ATGATCAATAACGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGCGGCATCTCGGTTGC
TACGTTCACTTTGGCCGTTGACCGGCAGTTTACCAATGCATCAGGCCAGAGAGAAGCGGACTTCATCAGCTGCGTGATTT
GGCGCAAGGCTGCGGAGAACTTCTGCAACTTCACCAGCAAGGGCAGTTTGGTGGGCATCCAGGGCCGGATCCAGACCAGA
AACTATGATAACAAGGACGGCCAGCGAGTTTACGTGACAGAAGTCCTCGTGGACAACTTCTCACTGCTCGAATCACGCCG
CGAGCGTGAAAGCCGTCAGCAAAACAGCGGATTTGGCGGCCAAGGTCAAAGCCAAAACACCGGCTTCAACACCGGATTTG
GCGGCGGCAGCGGCTACGCCAACAACGCCTTCGGCAGCCCGGCCCAGTCAAACGGGCCAGCTAATGCCGGATTCAATGAA
GATAACAAGAAAGATGCCGGCGGAGACACGAACACCAACCCGTTCGACAGCTCTGACGATGCAATCAACGTCTCAAATGA
CGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.333

100

0.586
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.597

100

0.466

Multiple sequence alignment