Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   C8250_RS24510 Genome accession   NZ_CP048835
Coordinates   5430379..5431764 (-) Length   461 a.a.
NCBI ID   WP_138354132.1    Uniprot ID   -
Organism   Streptomyces sp. So13.3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5425379..5436764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C8250_RS24485 (C8250_024500) - 5425784..5426392 (-) 609 WP_244809340.1 hypothetical protein -
  C8250_RS24490 (C8250_024505) - 5426380..5426910 (-) 531 WP_138354128.1 SigE family RNA polymerase sigma factor -
  C8250_RS24495 (C8250_024510) - 5427089..5427985 (-) 897 WP_138354129.1 A/G-specific adenine glycosylase -
  C8250_RS24500 (C8250_024515) - 5428117..5428938 (+) 822 WP_138354130.1 hypothetical protein -
  C8250_RS24505 (C8250_024520) disA 5429153..5430277 (-) 1125 WP_138354131.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  C8250_RS24510 (C8250_024525) radA/sms 5430379..5431764 (-) 1386 WP_138354132.1 DNA repair protein RadA Machinery gene
  C8250_RS24515 (C8250_024530) - 5431957..5433588 (+) 1632 WP_138354133.1 sigma-70 family RNA polymerase sigma factor -
  C8250_RS24520 (C8250_024535) - 5433787..5434596 (-) 810 WP_138354156.1 hypothetical protein -
  C8250_RS24525 (C8250_024540) - 5434719..5435687 (+) 969 WP_138354134.1 Ppx/GppA phosphatase family protein -
  C8250_RS24530 (C8250_024545) - 5435797..5436609 (+) 813 WP_138354157.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48285.57 Da        Isoelectric Point: 7.9863

>NTDB_id=370916 C8250_RS24510 WP_138354132.1 5430379..5431764(-) (radA/sms) [Streptomyces sp. So13.3]
MPPRKTATKDRPSYRCTECGWTTVKWLGRCGECQAWGTVEEFGGAPAVRTTAAGRVTTAAKPIGQVDVSQATARSTGVPE
LDRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAATAQGPTLYITAEESASQVRLRADRIGALSDHLYLAAETDLSAV
LGHLDDIKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLIRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVVEVQGLTVDTQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRIQAIGKRDIYTATVGGVKLTEPAADLAVALALASAAIDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLSEAARLGFTHALVPPDPGKIPPGMKVIEVADIGDALRVLPKRGSRA

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=370916 C8250_RS24510 WP_138354132.1 5430379..5431764(-) (radA/sms) [Streptomyces sp. So13.3]
ATGCCTCCCCGCAAGACCGCTACGAAGGACCGTCCGTCCTACCGCTGCACCGAGTGCGGCTGGACCACCGTGAAGTGGCT
CGGCCGCTGCGGGGAGTGCCAGGCCTGGGGCACCGTCGAGGAGTTCGGCGGCGCGCCCGCCGTCAGGACCACCGCGGCCG
GCCGGGTGACGACGGCCGCCAAGCCGATCGGCCAGGTGGACGTCAGCCAGGCGACGGCCCGCTCGACGGGTGTGCCCGAG
CTGGACCGGGTGCTCGGCGGCGGGCTGGTGCCCGGCGCGGTCGTGCTGGTCGCGGGTGAGCCGGGCGTCGGCAAGTCGAC
GCTGCTGCTGGACGTGGCGGCGAAGGCGGCGACCGCCCAGGGCCCGACGCTCTACATCACCGCCGAGGAGTCGGCGTCCC
AGGTCCGGCTGCGCGCCGACCGGATCGGCGCGCTCTCCGACCATCTGTACCTGGCGGCCGAGACGGACCTGTCGGCGGTC
CTGGGCCATCTGGACGACATCAAACCGTCGCTGCTGATCCTGGACTCGGTGCAGACGGTGGCGTCCCCGGAGATCGACGG
CGCGCCCGGCGGCATGGCGCAGGTCCGCGAGGTCGCGGGCGCGCTGATCCGCGCCTCCAAGGAGCGCGGTATGTCGACGC
TCCTGGTCGGCCATGTCACCAAGGACGGTGCCATCGCGGGCCCCCGTCTGCTGGAGCACCTGGTGGACGTGGTGCTGAGC
TTCGAGGGCGACCGACACGCCCGGCTGCGGCTGATCCGCGGCGTCAAGAACCGGTACGGCGCGACGGACGAGGTCGGCTG
CTTCGAACTGCACGACGAGGGCATCACGGGACTGGCCGATCCCTCCGGACTCTTCCTGACCCGCCGCGACGAACCGGTTC
CCGGTACGTGCCTGACGGTCACGCTGGAGGGCAAGCGCCCGCTGGTGGTCGAGGTCCAGGGGCTCACCGTCGACACCCAG
ATCCCGTCCCCGCGCCGCACGACCTCGGGTCTGGAGACGTCCCGGGTCTCGATGATGCTCGCTGTGCTGGAACAGCGCGG
CCGGATTCAGGCGATCGGAAAGCGCGACATCTACACGGCGACGGTGGGCGGTGTGAAGCTCACCGAGCCCGCCGCGGACC
TGGCCGTGGCGCTCGCGCTGGCCAGCGCGGCGATCGACACACCGCTGCCCAAGAACCTGGTCGCGATCGGCGAGGTCGGC
CTCGCGGGCGAGGTCAGACGGGTCACGGGGGTGCAGCGCAGGCTGTCCGAGGCCGCCCGGCTGGGCTTCACCCATGCCCT
GGTACCGCCGGATCCCGGGAAAATCCCGCCGGGCATGAAAGTGATCGAGGTGGCCGACATAGGAGACGCCCTGCGGGTGC
TCCCGAAGCGTGGCTCACGGGCCTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(77-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.027

98.048

0.432
  radA Streptococcus mitis SK321

42.762

97.397

0.416
  radA Streptococcus mitis NCTC 12261

42.762

97.397

0.416
  radA Streptococcus pneumoniae TIGR4

42.316

97.397

0.412
  radA Streptococcus pneumoniae D39

42.316

97.397

0.412
  radA Streptococcus pneumoniae Rx1

42.316

97.397

0.412
  radA Streptococcus pneumoniae R6

42.316

97.397

0.412