Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   C8250_RS21460 Genome accession   NZ_CP048835
Coordinates   4782050..4782649 (-) Length   199 a.a.
NCBI ID   WP_138359453.1    Uniprot ID   A0ABW8CBJ6
Organism   Streptomyces sp. So13.3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4777050..4787649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C8250_RS21440 (C8250_021460) - 4777759..4778322 (-) 564 WP_138359461.1 SigE family RNA polymerase sigma factor -
  C8250_RS21445 (C8250_021465) - 4778715..4779776 (-) 1062 WP_138359459.1 aspartate-semialdehyde dehydrogenase -
  C8250_RS21450 (C8250_021470) - 4779773..4781047 (-) 1275 WP_138359457.1 aspartate kinase -
  C8250_RS21455 (C8250_021475) - 4781335..4782057 (-) 723 WP_232485823.1 DUF5063 domain-containing protein -
  C8250_RS21460 (C8250_021480) recR 4782050..4782649 (-) 600 WP_138359453.1 recombination mediator RecR Machinery gene
  C8250_RS21465 (C8250_021485) - 4782667..4782999 (-) 333 WP_138359451.1 YbaB/EbfC family nucleoid-associated protein -
  C8250_RS44870 - 4783118..4783996 (-) 879 WP_346268762.1 hypothetical protein -
  C8250_RS44875 - 4784109..4785464 (-) 1356 WP_346268763.1 DNA polymerase III subunit gamma and tau -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21811.15 Da        Isoelectric Point: 5.3965

>NTDB_id=370903 C8250_RS21460 WP_138359453.1 4782050..4782649(-) (recR) [Streptomyces sp. So13.3]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQADPADVRRLAHVLAEVKAKVRFCNICGNVAQDDQCRVCRDPRRDLAV
ICVVEEPKDVVAVERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLTRLADGTVTELILATDPNLEGEATATYLARMVK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=370903 C8250_RS21460 WP_138359453.1 4782050..4782649(-) (recR) [Streptomyces sp. So13.3]
GTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTGGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGATCCGGCCGATGTGCGGCGCCTCGCGCACGTACTGGCCGAGGTCAAGGCCAAAGTGC
GGTTCTGCAACATCTGCGGGAACGTCGCGCAGGACGACCAGTGCAGGGTCTGCCGTGACCCGCGCCGCGATCTCGCGGTG
ATCTGCGTGGTCGAGGAGCCCAAGGATGTCGTCGCGGTCGAGCGCACCCGTGAGTTCCGCGGCAGGTACCACGTACTGGG
CGGCGCGATCAGCCCCATCGAGGGCGTCGGTCCGGACGATCTACGGATCCGGGAGCTGCTGACGCGGCTCGCGGACGGCA
CCGTCACCGAGCTGATTCTGGCGACGGATCCCAACCTTGAAGGTGAAGCGACCGCTACGTACCTGGCCCGCATGGTGAAA
CCCATGGGGCTGAAGGTGACGCGACTGGCCAGTGGTCTGCCCGTGGGGGGAGACCTGGAGTATGCCGACGAGGTCACGCT
GGGTCGTGCCTTCGAAGGGAGACGACTGCTCGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

48.454

97.487

0.472