Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   C8250_RS05265 Genome accession   NZ_CP048835
Coordinates   1114078..1115382 (-) Length   434 a.a.
NCBI ID   WP_138359093.1    Uniprot ID   -
Organism   Streptomyces sp. So13.3     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1109078..1120382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C8250_RS05240 (C8250_005270) - 1109364..1109609 (+) 246 WP_187144736.1 hypothetical protein -
  C8250_RS05245 (C8250_005275) - 1109748..1110161 (+) 414 WP_187144737.1 CAP domain-containing protein -
  C8250_RS05250 (C8250_005280) - 1110579..1112495 (-) 1917 WP_138359087.1 HAMP domain-containing sensor histidine kinase -
  C8250_RS05255 (C8250_005285) - 1112485..1113183 (-) 699 WP_138359089.1 response regulator transcription factor -
  C8250_RS05260 (C8250_005290) - 1113301..1114026 (-) 726 WP_138359091.1 class I SAM-dependent methyltransferase -
  C8250_RS05265 (C8250_005295) clpX 1114078..1115382 (-) 1305 WP_138359093.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  C8250_RS05270 (C8250_005300) - 1115556..1116668 (+) 1113 WP_138359095.1 TetR/AcrR family transcriptional regulator -
  C8250_RS05275 (C8250_005305) - 1116771..1117202 (-) 432 WP_138359097.1 protein phosphatase -
  C8250_RS05280 (C8250_005310) - 1117333..1117890 (+) 558 WP_138359099.1 dihydrofolate reductase family protein -
  C8250_RS05285 (C8250_005315) - 1117942..1119504 (-) 1563 WP_138359101.1 MFS transporter -
  C8250_RS05290 (C8250_005320) - 1119614..1120312 (+) 699 WP_164292727.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 434 a.a.        Molecular weight: 46961.70 Da        Isoelectric Point: 4.7561

>NTDB_id=370876 C8250_RS05265 WP_138359093.1 1114078..1115382(-) (clpX) [Streptomyces sp. So13.3]
MARIGDGGDLLKCTFCGKSQKQVGKLIAGPADICICDECVELCNELIVEETGGPPEAGSLELPTPREIHAFLDGYVIGQE
SAKKVLSVAVYNHYKRVRPQTGGSGKRGAKDETVELGKSNILLMGPTGCGKTYLVQTLARMLDVPFAIADATALTEAGYV
GEDVENILLKLIQAADHDVRKAERGIIYIDEIDKIARKSDGPSITRDVSGEGVQQALLKLLEGTTASVPPQGGRKQPRQE
FIAFDTSNVLFIVGGAFAGLERIIEQRASRSGIGFGAEVRSTEERRKRNEDAFADVMPADLVQFGLIPEIVGRLPMVSTV
QPLDVAALTRILTEPRNALIKQYQKLFELDGVELEFTEDAVAAVAEQALLRRTGARAARSILEEVLLNVMYEVPSRSDVA
RVVVDRDTVLDNVNPTLIPRDYPGPAPEPGERTA

Nucleotide


Download         Length: 1305 bp        

>NTDB_id=370876 C8250_RS05265 WP_138359093.1 1114078..1115382(-) (clpX) [Streptomyces sp. So13.3]
GTGGCACGCATCGGTGACGGCGGTGACCTGCTGAAATGTACGTTCTGCGGGAAGAGCCAGAAGCAGGTCGGCAAGCTCAT
CGCGGGACCGGCCGACATCTGCATCTGCGACGAGTGCGTCGAGCTCTGCAATGAACTCATCGTGGAGGAGACCGGCGGGC
CCCCCGAGGCCGGCTCGCTCGAACTTCCGACACCGCGCGAGATCCACGCCTTCCTCGACGGCTACGTCATCGGGCAGGAG
AGCGCCAAGAAGGTGCTGTCGGTGGCGGTCTACAACCACTACAAGCGGGTCCGTCCGCAGACCGGCGGGAGCGGGAAGCG
CGGTGCGAAGGACGAGACCGTCGAACTCGGCAAGTCCAACATCCTGCTGATGGGCCCGACCGGCTGCGGCAAGACGTACC
TCGTCCAGACGCTGGCCCGGATGCTCGACGTCCCGTTCGCGATCGCGGACGCCACCGCCCTCACCGAGGCCGGCTACGTC
GGGGAGGACGTCGAGAACATCCTGCTCAAGCTGATCCAGGCCGCCGACCACGACGTCCGGAAGGCCGAGCGCGGCATCAT
CTACATCGATGAGATCGACAAGATCGCCCGAAAGAGCGACGGGCCGTCGATCACCCGGGACGTCTCCGGCGAGGGCGTCC
AGCAGGCGCTGCTGAAGCTGCTGGAGGGCACCACCGCGAGCGTGCCGCCGCAGGGTGGCCGCAAGCAGCCGCGCCAGGAG
TTCATCGCGTTCGACACGAGCAACGTGCTGTTCATCGTCGGTGGCGCGTTCGCCGGCCTGGAGCGGATCATCGAGCAGCG
CGCCAGCCGTTCGGGCATCGGATTCGGCGCCGAGGTGCGCAGCACGGAGGAGCGGCGGAAGCGGAACGAGGACGCCTTCG
CCGACGTCATGCCCGCGGACCTGGTGCAGTTCGGGCTCATCCCGGAGATCGTCGGCCGGCTGCCCATGGTGTCGACCGTC
CAGCCGCTGGACGTGGCGGCGCTGACCCGGATCCTGACCGAGCCCCGCAACGCGCTCATCAAGCAGTACCAGAAGCTCTT
CGAGCTCGACGGCGTCGAGCTGGAGTTCACCGAGGACGCCGTCGCCGCCGTCGCGGAGCAGGCCCTGCTGCGCCGCACCG
GCGCCCGGGCGGCCCGCTCGATCCTCGAAGAGGTCCTGCTCAACGTGATGTACGAGGTGCCGAGCCGGAGCGATGTGGCC
CGCGTCGTCGTCGACCGCGACACGGTGCTCGACAACGTCAACCCGACCCTGATCCCGCGCGACTACCCCGGCCCCGCCCC
GGAACCCGGCGAACGGACCGCCTGA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(323-400)

AAA domain (Cdc48 subfamily) (AAA_2)

(118-316)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

56.757

93.779

0.532
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.807

95.622

0.495