Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   G3T50_RS06110 Genome accession   NZ_CP048771
Coordinates   1162179..1162844 (-) Length   221 a.a.
NCBI ID   WP_057095925.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZS007     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1157179..1167844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T50_RS06095 (G3T50_06070) groES 1159035..1159295 (+) 261 WP_002825273.1 co-chaperone GroES -
  G3T50_RS06100 (G3T50_06075) groL 1159316..1160953 (+) 1638 WP_002872481.1 chaperonin GroEL -
  G3T50_RS06105 (G3T50_06080) dccS 1160996..1162186 (-) 1191 WP_087695925.1 two-component system sensor histidine kinase DccS -
  G3T50_RS06110 (G3T50_06085) ciaR 1162179..1162844 (-) 666 WP_057095925.1 two-component system response regulator DccR Regulator
  G3T50_RS06115 (G3T50_06090) - 1162992..1163591 (+) 600 WP_002866222.1 bacteriohemerythrin -
  G3T50_RS09700 - 1163602..1163841 (+) 240 Protein_1192 ribbon-helix-helix domain-containing protein -
  G3T50_RS06130 (G3T50_06105) - 1164228..1165475 (-) 1248 WP_002853241.1 ArsS family sensor histidine kinase -
  G3T50_RS06135 (G3T50_06110) - 1165472..1166146 (-) 675 WP_002777451.1 response regulator transcription factor -
  G3T50_RS06140 (G3T50_06115) htrA 1166222..1167640 (-) 1419 WP_057035624.1 serine protease HtrA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25477.18 Da        Isoelectric Point: 4.7616

>NTDB_id=370696 G3T50_RS06110 WP_057095925.1 1162179..1162844(-) (ciaR) [Campylobacter jejuni strain ZS007]
MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYERHFDLLILDVKVPLGDGFSLLKELRKSGKQTPAIFM
TSLNTTNDLKQGFDAGCDDYIKKPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYHNNKALALPSKEIK
LLSLLLKNKNSFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGYCYG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=370696 G3T50_RS06110 WP_057095925.1 1162179..1162844(-) (ciaR) [Campylobacter jejuni strain ZS007]
ATGGCTGCTAAAATTTTACTTTTAGAAGATGATTTGAGTTTAAGTGAGATCATTGAAGAGTTTTTAAACGATGAAGGATA
TGAAGTATTTTTATGCGATAATGCACAAGAAGCTTTAGATATGGCTTATGAAAGACATTTTGATCTTTTGATTTTAGATG
TCAAAGTTCCTTTGGGAGATGGATTTTCATTACTTAAAGAATTGAGAAAAAGTGGAAAGCAAACTCCAGCAATTTTCATG
ACTTCTTTAAACACAACAAACGATTTAAAACAAGGCTTTGACGCAGGTTGTGATGATTATATAAAAAAACCTTTTGAACT
TGCCGAGTTATCTATCAGGGTTAAAGCTTTGCTTAAAAGAGCTTTTTCACATAAAAATGAAGATTTTGAAGATTTAGGGG
ATGGATTTAGGTTCGAATTTACTACACAAATTCTTTATCATAATAATAAAGCTTTGGCTTTGCCGAGCAAAGAGATTAAA
CTTTTGTCTTTATTGCTTAAAAATAAAAACAGCTTTTTAAGCACAGAGAGAATTTTTGAAGAACTTTGGGATTATGATGA
GGAGCCTAGTGAGCTAAGTTTAAGAGCTTATGTAAAAAATTTACGTAAAATTTTAGGAAAAGAAAAAATTATAAACCAAA
GAGGCAGGGGATATTGCTATGGCTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-219)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae D39

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae R6

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae TIGR4

36.364

99.548

0.362

Multiple sequence alignment