Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   G3T50_RS06025 Genome accession   NZ_CP048771
Coordinates   1145290..1146156 (-) Length   288 a.a.
NCBI ID   WP_002852840.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZS007     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1140290..1151156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T50_RS06000 (G3T50_05980) gpsA 1140590..1141486 (-) 897 WP_072233169.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  G3T50_RS06005 (G3T50_05985) gatB 1141483..1142901 (-) 1419 WP_126204086.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  G3T50_RS09695 - 1143019..1143204 (-) 186 WP_052779690.1 hypothetical protein -
  G3T50_RS06015 (G3T50_05990) atpB 1143201..1143881 (-) 681 WP_052779689.1 F0F1 ATP synthase subunit A -
  G3T50_RS06020 (G3T50_05995) radA 1143950..1145290 (-) 1341 WP_167842852.1 DNA repair protein RadA Machinery gene
  G3T50_RS06025 (G3T50_06000) pilA 1145290..1146156 (-) 867 WP_002852840.1 signal recognition particle-docking protein FtsY Machinery gene
  G3T50_RS06030 (G3T50_06005) - 1146156..1146713 (-) 558 WP_052781690.1 TlpA disulfide reductase family protein -
  G3T50_RS06035 (G3T50_06010) - 1146796..1147422 (+) 627 WP_052781689.1 5-formyltetrahydrofolate cyclo-ligase -
  G3T50_RS06040 (G3T50_06015) rny 1147343..1148896 (+) 1554 WP_002853829.1 ribonuclease Y -
  G3T50_RS06045 (G3T50_06020) - 1148905..1149462 (+) 558 WP_052781688.1 DedA family protein -
  G3T50_RS06050 (G3T50_06025) - 1149462..1150721 (+) 1260 WP_167842853.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32036.03 Da        Isoelectric Point: 5.5179

>NTDB_id=370694 G3T50_RS06025 WP_002852840.1 1145290..1146156(-) (pilA) [Campylobacter jejuni strain ZS007]
MFNFFKKGLAKTLENIVGIKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=370694 G3T50_RS06025 WP_002852840.1 1145290..1146156(-) (pilA) [Campylobacter jejuni strain ZS007]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGGATTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CCCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAACTTGCTTATTTATA
TAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAACAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATCTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCCCATGAGCT
TGAAAAAATTGTGAGAATTTCAAACAAAGCTTTAGAAGGTGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTAGGTGAGCAAAT
GACGGATTTGCAAGAATTTAATGCAAGTGCTTATTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.254

100

0.434