Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   G3T50_RS06020 Genome accession   NZ_CP048771
Coordinates   1143950..1145290 (-) Length   446 a.a.
NCBI ID   WP_167842852.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZS007     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1138950..1150290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T50_RS05995 (G3T50_05975) - 1139402..1140580 (-) 1179 WP_052784222.1 metal-dependent hydrolase -
  G3T50_RS06000 (G3T50_05980) gpsA 1140590..1141486 (-) 897 WP_072233169.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  G3T50_RS06005 (G3T50_05985) gatB 1141483..1142901 (-) 1419 WP_126204086.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  G3T50_RS09695 - 1143019..1143204 (-) 186 WP_052779690.1 hypothetical protein -
  G3T50_RS06015 (G3T50_05990) atpB 1143201..1143881 (-) 681 WP_052779689.1 F0F1 ATP synthase subunit A -
  G3T50_RS06020 (G3T50_05995) radA 1143950..1145290 (-) 1341 WP_167842852.1 DNA repair protein RadA Machinery gene
  G3T50_RS06025 (G3T50_06000) pilA 1145290..1146156 (-) 867 WP_002852840.1 signal recognition particle-docking protein FtsY Machinery gene
  G3T50_RS06030 (G3T50_06005) - 1146156..1146713 (-) 558 WP_052781690.1 TlpA disulfide reductase family protein -
  G3T50_RS06035 (G3T50_06010) - 1146796..1147422 (+) 627 WP_052781689.1 5-formyltetrahydrofolate cyclo-ligase -
  G3T50_RS06040 (G3T50_06015) rny 1147343..1148896 (+) 1554 WP_002853829.1 ribonuclease Y -
  G3T50_RS06045 (G3T50_06020) - 1148905..1149462 (+) 558 WP_052781688.1 DedA family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49054.94 Da        Isoelectric Point: 6.9288

>NTDB_id=370693 G3T50_RS06020 WP_167842852.1 1143950..1145290(-) (radA) [Campylobacter jejuni strain ZS007]
MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFIELKAEQIKVLKELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKTQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKDYSILIVDSIQTLYSNKVTSAAGSITQVREITFELMRVSKAYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAKDLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=370693 G3T50_RS06020 WP_167842852.1 1143950..1145290(-) (radA) [Campylobacter jejuni strain ZS007]
ATGGCAAAAAATAAAGCACTTTTTGAATGTCAAGCTTGTGGAAATCAACAAAGCAAATGGCTTGGAAAATGTCCTGATTG
TGGAGCTTGGGATAGTTTTATAGAATTAAAAGCTGAGCAAATTAAAGTTTTAAAAGAGCTTGCGCAAGTTAGTATGAAAA
CAAGTGAAGCTGTTTGTATTGAAGATGTGGAATTAGAACATTTTACAAGATACAGCACAGATGATAATGAGCTTGATTTG
GTTTTAGGCGGAGGGCTTGTTGAAGGTTCTTTAGTGCTTATAGGCGGAAGTCCAGGTGTGGGAAAATCTACGCTTTTGTT
AAAAATTGCTTCAAATTTAGCCAAACAGGGTAAAAAAGTGCTTTATGTCAGTGGCGAAGAAAGTAAAACCCAGATTAAAT
TAAGAGCTGATCGTCTTGAGGCTAATACTCCGAATTTATTTTTGCTTACTGAACTTTGCCTTGAAAATATTTTAGAAGAA
TTGCACAAAAAAGATTATAGTATTCTTATCGTTGACTCTATACAAACTCTATATTCAAATAAAGTCACTTCAGCAGCAGG
AAGCATCACTCAGGTGCGTGAGATTACTTTTGAACTTATGCGTGTTAGCAAAGCTTATAATATCAGTACTTTTATCATAG
GGCACATTACTAAAGAAGGTGCTATAGCAGGACCTAGAGTTCTTGAACATATGGTGGATGTGGTGCTTTATTTTGAAGGA
GATGCTACTAAAGAAATCAGACTTTTAAGAGGCTTTAAAAATCGTTTTGGTGGAACAAATGAAGTAGGTATTTTTGAGAT
GACTGCTAAGGGTTTGATCAGTGCAAAAGATTTGGCAAATCGTTTTTTTACTCGTGGAAAGGCTATTTCAGGAAGTGCTT
TAGGTGTTGTGATGGAAGGATCTCGTGCCTTGGTTTTAGAAGTTCAAGCTTTAGTGTGTGAAAGTTCTTATCCAAAACGC
AGCGCTACAGGATATGAAAAAAATCGCTTAGATATGCTTTTGGCTTTGCTTGAAAGAAAGCTTGAAATTCCTTTAGGGCA
TTATGATGTATTTGTAAATATTAGCGGCGGAGTAAAAGTAAGTGAAACTGCTGCGGATTTGGCTGTGGTTGCTGCGATTA
TTTCAAGTTTTAAAAATCGCCCTTTGAGCAAAGATAGTATTTTTATAGGAGAGCTTAGTTTAAATGGAGAAATTAGAGAG
GTTTTTAGCCTTGATACGCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCTATTGTTCCTTCTAAGCCTTTGGA
AGATATAGGACTTAAGTGTTTTGTTGCTAAAGAACTTTCACAAGTTTTAGAATGGATGTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

45.414

100

0.455
  radA Streptococcus pneumoniae Rx1

45.414

100

0.455
  radA Streptococcus pneumoniae D39

45.414

100

0.455
  radA Streptococcus pneumoniae TIGR4

45.414

100

0.455
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.437

97.534

0.453
  radA Streptococcus mitis SK321

45.393

99.776

0.453
  radA Streptococcus mitis NCTC 12261

45.393

99.776

0.453

Multiple sequence alignment