Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G3T50_RS05415 Genome accession   NZ_CP048771
Coordinates   1026487..1027038 (+) Length   183 a.a.
NCBI ID   WP_002853013.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZS007     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1021487..1032038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T50_RS05380 (G3T50_05355) - 1021674..1022101 (+) 428 Protein_1045 GNAT family N-acetyltransferase -
  G3T50_RS05385 - 1022165..1022786 (+) 622 Protein_1046 NAD(P)H-dependent oxidoreductase -
  G3T50_RS05390 (G3T50_05370) - 1022786..1023391 (+) 606 WP_167842826.1 NAD(P)H-dependent oxidoreductase -
  G3T50_RS05395 (G3T50_05375) pgsA 1023516..1024052 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  G3T50_RS05400 (G3T50_05380) rseP 1024049..1025155 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  G3T50_RS05405 (G3T50_05385) - 1025148..1026014 (+) 867 WP_032592436.1 VirK family antimicrobial peptide resistance protein -
  G3T50_RS05410 (G3T50_05390) rpsF 1026101..1026478 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  G3T50_RS05415 (G3T50_05395) ssb 1026487..1027038 (+) 552 WP_002853013.1 single-stranded DNA-binding protein Machinery gene
  G3T50_RS05420 (G3T50_05400) rpsR 1027049..1027309 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  G3T50_RS05425 (G3T50_05405) lon 1027369..1029744 (-) 2376 WP_002853487.1 endopeptidase La -
  G3T50_RS05430 (G3T50_05410) - 1029761..1030408 (-) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  G3T50_RS05435 (G3T50_05415) fliW 1030569..1030958 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  G3T50_RS05440 (G3T50_05420) proC 1030958..1031689 (+) 732 WP_052801667.1 pyrroline-5-carboxylate reductase Machinery gene
  G3T50_RS05445 (G3T50_05425) ctsT 1031686..1031988 (+) 303 WP_002936694.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20710.60 Da        Isoelectric Point: 5.0431

>NTDB_id=370686 G3T50_RS05415 WP_002853013.1 1026487..1027038(+) (ssb) [Campylobacter jejuni strain ZS007]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=370686 G3T50_RS05415 WP_002853013.1 1026487..1027038(+) (ssb) [Campylobacter jejuni strain ZS007]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGTACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361

Multiple sequence alignment