Detailed information NTG0037065

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: HMPREF0772_RS02445
• Genome accession: NC_017342
• Coordinates: 515412..516524 (-)
• Length: 370 a.a.
• NCBI ID: WP_000775113.1
• Uniprot ID: P68863
• Organism: Staphylococcus aureus subsp. aureus TCH60
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 510412..521524

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HMPREF0772_RS02435 (HMPREF0772_10462)	gyrA	510771..513431 (-)	2661	WP_000819098.1	DNA gyrase subunit A	-
HMPREF0772_RS02440 (HMPREF0772_10463)	gyrB	513468..515402 (-)	1935	WP_000255583.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
HMPREF0772_RS02445 (HMPREF0772_10464)	recF	515412..516524 (-)	1113	WP_000775113.1	DNA replication/repair protein RecF	Machinery gene
HMPREF0772_RS02450 (HMPREF0772_10465)	yaaA	516521..516766 (-)	246	WP_001789359.1	S4 domain-containing protein YaaA	-
HMPREF0772_RS02455 (HMPREF0772_10466)	dnaN	517147..518280 (-)	1134	WP_000969811.1	DNA polymerase III subunit beta	-
HMPREF0772_RS02460 (HMPREF0772_10467)	dnaA	518558..519919 (-)	1362	WP_001290430.1	chromosomal replication initiator protein DnaA	-
HMPREF0772_RS02465 (HMPREF0772_10468)	rpmH	520650..520787 (+)	138	WP_000240855.1	50S ribosomal protein L34	-
HMPREF0772_RS02470 (HMPREF0772_10469)	rnpA	520909..521262 (+)	354	WP_001789343.1	ribonuclease P protein component	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42415.43 Da
• Isoelectric Point: 6.4362

>NTDB_id=37065 HMPREF0772_RS02445 WP_000775113.1 515412..516524(-) (recF) [Staphylococcus aureus subsp. aureus TCH60]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide

• Length: 1113 bp

>NTDB_id=37065 HMPREF0772_RS02445 WP_000775113.1 515412..516524(-) (recF) [Staphylococcus aureus subsp. aureus TCH60]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAACAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-347)

3D structure

• AlphaFold DB: P68863

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	58.649	100	0.586
recF	Streptococcus pneumoniae R6	49.33	100	0.497