Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   G3R55_RS05700 Genome accession   NZ_CP048769
Coordinates   1096507..1097373 (-) Length   288 a.a.
NCBI ID   WP_167861744.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZJB020     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1091507..1102373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3R55_RS05680 (G3R55_05680) metF 1093360..1094208 (+) 849 WP_052793735.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  G3R55_RS05685 (G3R55_05685) - 1094230..1094421 (-) 192 WP_002914249.1 membrane protein -
  G3R55_RS05690 (G3R55_05690) atpB 1094418..1095098 (-) 681 WP_052779689.1 F0F1 ATP synthase subunit A -
  G3R55_RS05695 (G3R55_05695) radA 1095167..1096507 (-) 1341 WP_096738243.1 DNA repair protein RadA Machinery gene
  G3R55_RS05700 (G3R55_05700) pilA 1096507..1097373 (-) 867 WP_167861744.1 signal recognition particle-docking protein FtsY Machinery gene
  G3R55_RS05705 (G3R55_05705) - 1097373..1097930 (-) 558 WP_167861745.1 TlpA disulfide reductase family protein -
  G3R55_RS05710 (G3R55_05710) - 1098013..1098639 (+) 627 WP_052781689.1 5-formyltetrahydrofolate cyclo-ligase -
  G3R55_RS05715 (G3R55_05715) rny 1098560..1100113 (+) 1554 WP_002853829.1 ribonuclease Y -
  G3R55_RS05720 (G3R55_05720) - 1100122..1100679 (+) 558 WP_052781688.1 DedA family protein -
  G3R55_RS05725 (G3R55_05725) - 1100679..1101938 (+) 1260 WP_167861746.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32021.02 Da        Isoelectric Point: 5.2821

>NTDB_id=370648 G3R55_RS05700 WP_167861744.1 1096507..1097373(-) (pilA) [Campylobacter jejuni strain ZJB020]
MFNFFKKGLAKTLENIVGIKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKIETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=370648 G3R55_RS05700 WP_167861744.1 1096507..1097373(-) (pilA) [Campylobacter jejuni strain ZJB020]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGGATTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAATAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCGGGAAAAACAACAAGTATTGCCAAGCTTGCTTATTTATA
TAAAAACCAAAATCAAAAAGTGATTTTAGGGGCGTGTGATACTTTTAGAGCAGGTGCGATTGAACAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATCTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCCCATGAGCT
TGAAAAAATTGTGAGAATTTCAAACAAAGCTTTAGAAGGTGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTGCAAGAATTTAATGCAAGTGCTTATTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

40.268

100

0.417