Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   G3R55_RS05695 Genome accession   NZ_CP048769
Coordinates   1095167..1096507 (-) Length   446 a.a.
NCBI ID   WP_096738243.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZJB020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1090167..1101507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3R55_RS05670 (G3R55_05670) - 1090304..1091074 (+) 771 WP_052793737.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  G3R55_RS05675 (G3R55_05675) metE 1091086..1093350 (+) 2265 WP_052793736.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  G3R55_RS05680 (G3R55_05680) metF 1093360..1094208 (+) 849 WP_052793735.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  G3R55_RS05685 (G3R55_05685) - 1094230..1094421 (-) 192 WP_002914249.1 membrane protein -
  G3R55_RS05690 (G3R55_05690) atpB 1094418..1095098 (-) 681 WP_052779689.1 F0F1 ATP synthase subunit A -
  G3R55_RS05695 (G3R55_05695) radA 1095167..1096507 (-) 1341 WP_096738243.1 DNA repair protein RadA Machinery gene
  G3R55_RS05700 (G3R55_05700) pilA 1096507..1097373 (-) 867 WP_167861744.1 signal recognition particle-docking protein FtsY Machinery gene
  G3R55_RS05705 (G3R55_05705) - 1097373..1097930 (-) 558 WP_167861745.1 TlpA disulfide reductase family protein -
  G3R55_RS05710 (G3R55_05710) - 1098013..1098639 (+) 627 WP_052781689.1 5-formyltetrahydrofolate cyclo-ligase -
  G3R55_RS05715 (G3R55_05715) rny 1098560..1100113 (+) 1554 WP_002853829.1 ribonuclease Y -
  G3R55_RS05720 (G3R55_05720) - 1100122..1100679 (+) 558 WP_052781688.1 DedA family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49080.97 Da        Isoelectric Point: 6.8353

>NTDB_id=370647 G3R55_RS05695 WP_096738243.1 1095167..1096507(-) (radA) [Campylobacter jejuni strain ZJB020]
MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVLKELAQVSMKTSEAVCIEDVELEYFTRYSTDDNELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKDYSILIIDSIQTLYSNKVTSAAGSITQVREITFELMRVSKAYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTNEVGIFEMTTKGLISAKDLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=370647 G3R55_RS05695 WP_096738243.1 1095167..1096507(-) (radA) [Campylobacter jejuni strain ZJB020]
ATGGCAAAAAATAAAGCACTTTTTGAATGTCAAGCTTGTGGAAATCAACAAAGCAAATGGCTTGGAAAATGTCCTGATTG
TGGAGCTTGGGATAGTTTTGTAGAATTAAAAGCTGAGCAAATTAAAGTTTTAAAAGAGCTTGCGCAAGTTAGTATGAAAA
CAAGTGAAGCTGTTTGTATTGAAGATGTGGAATTAGAATATTTTACAAGATACAGCACAGATGATAATGAGCTTGATTTG
GTTTTAGGCGGAGGGCTTGTTGAAGGTTCTTTAGTGCTTATAGGCGGAAGTCCAGGTGTGGGAAAATCTACGCTTTTGTT
AAAAATTGCTTCAAATTTAGCTAAACAGGGTAAAAAAGTGCTTTATGTCAGTGGCGAAGAAAGTAAAGCTCAGATTAAAT
TAAGAGCTGATCGCCTTGAGGCTAATACTCCGAATTTATTTTTGCTTACTGAACTTTGCCTTGAAAATATTTTAGAAGAA
TTGCACAAAAAGGATTATAGTATTCTTATCATTGATTCTATACAAACTCTATATTCAAATAAAGTCACTTCAGCAGCAGG
AAGCATCACTCAGGTGCGTGAGATTACTTTCGAACTTATGCGTGTTAGCAAGGCTTATAATATCAGTACTTTTATCATAG
GGCACATTACTAAAGAAGGTGCTATAGCAGGACCTAGGGTTCTTGAACATATGGTGGATGTGGTGCTTTATTTTGAAGGA
GATGCCACTAAAGAAATTAGACTTTTAAGAGGCTTTAAAAATCGTTTTGGTGGAACGAATGAAGTAGGTATTTTTGAGAT
GACTACTAAGGGTTTGATCAGTGCAAAAGATTTGGCAAATCGTTTTTTTACTCGTGGAAAGGCTATTTCAGGAAGTGCTT
TAGGTGTTGTGATGGAAGGATCTCGTGCTTTGGTTTTAGAAGTTCAAGCTTTAGTGTGTGAAAGTTCTTATCCAAAACGT
AGCGCTACAGGGTATGAAAAAAATCGCTTAGATATGCTTTTGGCTTTGCTTGAAAGAAAACTTGAAATTCCTTTAGGGCA
TTATGATGTATTTGTAAATATTAGCGGCGGAGTAAAAGTAAGTGAAACTGCTGCGGATTTGGCTGTGGTTGCTGCGATTA
TTTCAAGTTTTAAAAATCGCCCTTTGAGCAAAGATAGTATTTTTATAGGAGAGCTTAGTTTAAATGGAGAAATTAGAGAG
GTTTTTAGCCTTGATACGCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCTATTGTTCCTTCTAAGCCTTTGGA
AGATATAGGACTTAAGTGTTTTGTTGCTAAAGAACTTTCACAAGTTTTAGAATGGATGTAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(74-220)

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

45.861

100

0.46
  radA Streptococcus pneumoniae Rx1

45.861

100

0.46
  radA Streptococcus pneumoniae D39

45.861

100

0.46
  radA Streptococcus pneumoniae TIGR4

45.861

100

0.46
  radA Streptococcus mitis SK321

45.843

99.776

0.457
  radA Streptococcus mitis NCTC 12261

45.843

99.776

0.457
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.437

97.534

0.453