Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G3R55_RS00955 Genome accession   NZ_CP048769
Coordinates   186519..188024 (-) Length   501 a.a.
NCBI ID   WP_044260744.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZJB020     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 181519..193024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3R55_RS00925 (G3R55_00915) - 181721..182905 (-) 1185 WP_002937148.1 metallophosphoesterase -
  G3R55_RS00930 (G3R55_00920) - 182915..183124 (-) 210 WP_052794263.1 alkylphosphonate utilization protein -
  G3R55_RS00935 (G3R55_00925) - 183117..183836 (-) 720 WP_002890644.1 TerC family protein -
  G3R55_RS00940 (G3R55_00930) purN 183908..184474 (-) 567 WP_044260737.1 phosphoribosylglycinamide formyltransferase -
  G3R55_RS00945 (G3R55_00935) - 184465..185835 (-) 1371 WP_087695910.1 NAD(P)H-hydrate dehydratase -
  G3R55_RS00950 (G3R55_00940) - 185819..186517 (-) 699 WP_167861559.1 NYN domain-containing protein -
  G3R55_RS00955 (G3R55_00945) comM 186519..188024 (-) 1506 WP_044260744.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  G3R55_RS00960 (G3R55_00950) def 188021..188548 (-) 528 WP_002851936.1 peptide deformylase -
  G3R55_RS00965 (G3R55_00955) clpP 188584..189168 (-) 585 WP_002806309.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  G3R55_RS00970 (G3R55_00960) tig 189168..190502 (-) 1335 WP_044260745.1 trigger factor -
  G3R55_RS00975 (G3R55_00965) folE 190645..191217 (+) 573 WP_167861560.1 GTP cyclohydrolase I FolE -
  G3R55_RS00980 (G3R55_00970) fliI 191217..192602 (+) 1386 WP_052782237.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56503.55 Da        Isoelectric Point: 8.7353

>NTDB_id=370624 G3R55_RS00955 WP_044260744.1 186519..188024(-) (comM) [Campylobacter jejuni strain ZJB020]
MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASTAIKESVERIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDL
AIALLILLQNEELDDFFVVGELGLDGSIKSTNELFSLILFLSAKIKKTKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
FKEKNYENFRFSHNHPLFTNPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALGMHNILFEGSPGSGKSMCAKRLV
YIMPPQSLSEILMQNAYMSLDSKDCEFTKIRAFRHPHHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIE
SLREPLEDYKIHISRVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLYVAMDEISK
DDKVSISSKEMSEKILQAFIFGKKRGQKEFNGKLKDEDLSRFCVLEKDAKDTLDLAISRYNLSLRSLNKILKVSRSIADL
EQSLNINKTHILEALSFRARN

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=370624 G3R55_RS00955 WP_044260744.1 186519..188024(-) (comM) [Campylobacter jejuni strain ZJB020]
ATGAAAAAACTAAAGTGCATAAGCTTTCATGAAGGCTTAGACATTATAGAGGTAGAATCCACTTTTACAAGAGGTTTGCC
AAATTTAAGCATAGTAGGGCTTGCAAGTACAGCGATTAAGGAAAGTGTCGAACGCATCAAAGCCACGCTTTTAAGTTGTG
ATTTTGCTTTTCCTGCTAAAAAAATTACTATCAATCTTAGTCCTTCAGGCATCCCAAAAAAGGGATCGCATTTTGATTTG
GCTATCGCTTTATTAATTCTTTTACAAAATGAAGAATTAGATGACTTTTTTGTAGTAGGAGAATTAGGACTTGATGGAAG
TATTAAAAGTACAAACGAGCTTTTTTCTTTGATTTTGTTTCTCTCTGCTAAAATTAAAAAAACTAAGATCGTTGTTCCAA
AAAGTATAGCACAAAAAGCTTCCATGATACCAAATTTAGAGGTTTATGGACTTGAAAATTTAAATGAAGCAATAGAGTTT
TTTAAAGAAAAAAATTATGAAAATTTTCGCTTTTCTCACAATCATCCTTTATTTACAAACCCTTTACAAATAGAAAATGA
AATTTTTTTACAAAATATGGATTTTAAACTTGACTTTAAAGATATCAAAGGACAGGAAAAAGCCAAAAGAGCTTGCATGA
TAGCTGCTTTAGGTATGCATAATATCTTATTTGAAGGAAGTCCAGGAAGTGGTAAAAGCATGTGTGCTAAACGCCTTGTT
TATATCATGCCCCCTCAAAGTTTAAGTGAAATTTTAATGCAAAATGCTTATATGTCTTTAGATTCAAAAGATTGTGAATT
TACTAAAATTCGTGCTTTTCGCCATCCTCATCATACTTCTACAAGAGCAAGTATTTTTGGCGGAGGAACAAAAAATGCCA
GAATTGGAGAAGTAGCACTTGCAAATGGTGGAGTATTGTTTTTTGATGAATTTCCACATTTTAACAAGCAAATCATAGAG
AGTTTAAGAGAACCTTTGGAGGATTATAAAATTCATATTTCAAGAGTAAATTCTAAAATCACTTATGAAACAAAATTTAG
CTTTATAGCTGCCCAAAATCCTTGTCCTTGTGGAAATTTATTCTCCAAAAATCTTTCTTGCGTTTGTAGCGAAAATGAGA
TTAAAAAGTATAAAAATCACATTTCAGCTCCTATTATGGATAGGATTGATCTTTATGTAGCTATGGATGAGATCAGCAAG
GATGATAAAGTAAGTATAAGTTCTAAAGAAATGAGTGAAAAAATTTTACAAGCTTTTATTTTTGGTAAAAAACGGGGGCA
AAAAGAATTTAATGGGAAATTAAAAGATGAAGATTTGAGTCGTTTTTGTGTATTGGAAAAAGATGCTAAAGATACGCTAG
ATTTAGCAATTTCACGTTATAATCTTTCTTTGCGATCACTCAATAAAATTTTAAAAGTTTCAAGAAGTATAGCGGATTTA
GAACAAAGTCTTAATATTAACAAAACCCATATTTTAGAAGCTTTAAGCTTTAGAGCAAGGAATTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)

Subunit ChlI of Mg-chelatase (ChlI)

(18-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

47.094

99.601

0.469
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

36.4

99.8

0.363

Multiple sequence alignment