Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HMPREF0772_RS00305 Genome accession   NC_017342
Coordinates   50183..50779 (-) Length   198 a.a.
NCBI ID   WP_000559156.1    Uniprot ID   Q8NY07
Organism   Staphylococcus aureus subsp. aureus TCH60     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 45183..55779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0772_RS14980 - 49772..49840 (-) 69 WP_370458382.1 hypothetical protein -
  HMPREF0772_RS00305 (HMPREF0772_10042) recR 50183..50779 (-) 597 WP_000559156.1 recombination mediator RecR Machinery gene
  HMPREF0772_RS00310 (HMPREF0772_10043) - 50786..51103 (-) 318 WP_001213992.1 YbaB/EbfC family nucleoid-associated protein -
  HMPREF0772_RS00315 (HMPREF0772_10044) dnaX 51193..52890 (-) 1698 WP_001109044.1 DNA polymerase III subunit gamma/tau -
  HMPREF0772_RS00320 (HMPREF0772_10045) - 52959..53483 (-) 525 WP_001167834.1 GNAT family N-acetyltransferase -
  HMPREF0772_RS00325 - 53622..53723 (-) 102 WP_001791573.1 hypothetical protein -
  HMPREF0772_RS00330 (HMPREF0772_10046) treR 54124..54852 (-) 729 WP_001118676.1 trehalose operon repressor -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22099.51 Da        Isoelectric Point: 4.7564

>NTDB_id=37060 HMPREF0772_RS00305 WP_000559156.1 50183..50779(-) (recR) [Staphylococcus aureus subsp. aureus TCH60]
MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKNDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=37060 HMPREF0772_RS00305 WP_000559156.1 50183..50779(-) (recR) [Staphylococcus aureus subsp. aureus TCH60]
ATGCATTATCCAGAACCTATATCAAAGCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAAAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAGCAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATACAAAGGTTTATATCACGTTTT
ACATGGGTCTATTTCGCCTATGGATGGAATTGGACCAGAAGATATTAATATTCCTTCATTGATTGAACGCTTGAAAAACG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAGGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCTGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAAC
ATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8NY07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

77.273

100

0.773
  recR Streptococcus pneumoniae R6

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475