Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G3T43_RS05060 Genome accession   NZ_CP048767
Coordinates   970352..970903 (+) Length   183 a.a.
NCBI ID   WP_087691968.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZJB021     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 965352..975903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T43_RS05025 (G3T43_05025) - 965542..965968 (+) 427 Protein_978 GNAT family N-acetyltransferase -
  G3T43_RS05030 (G3T43_05030) - 966032..966651 (+) 620 Protein_979 NAD(P)H-dependent oxidoreductase -
  G3T43_RS05035 (G3T43_05035) - 966651..967256 (+) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  G3T43_RS05040 (G3T43_05040) pgsA 967381..967917 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  G3T43_RS05045 (G3T43_05045) rseP 967914..969020 (+) 1107 WP_167861718.1 RIP metalloprotease RseP -
  G3T43_RS05050 (G3T43_05050) - 969013..969879 (+) 867 WP_167861719.1 VirK family antimicrobial peptide resistance protein -
  G3T43_RS05055 (G3T43_05055) rpsF 969966..970343 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  G3T43_RS05060 (G3T43_05060) ssb 970352..970903 (+) 552 WP_087691968.1 single-stranded DNA-binding protein Machinery gene
  G3T43_RS05065 (G3T43_05065) rpsR 970914..971174 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  G3T43_RS05070 (G3T43_05070) lon 971234..973609 (-) 2376 WP_002853487.1 endopeptidase La -
  G3T43_RS05075 (G3T43_05075) - 973626..974273 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  G3T43_RS05080 (G3T43_05080) fliW 974434..974823 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  G3T43_RS05085 (G3T43_05085) proC 974823..975554 (+) 732 WP_052801667.1 pyrroline-5-carboxylate reductase Machinery gene
  G3T43_RS05090 (G3T43_05090) ctsT 975551..975853 (+) 303 WP_002936694.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20737.63 Da        Isoelectric Point: 5.0431

>NTDB_id=370592 G3T43_RS05060 WP_087691968.1 970352..970903(+) (ssb) [Campylobacter jejuni strain ZJB021]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDINFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=370592 G3T43_RS05060 WP_087691968.1 970352..970903(+) (ssb) [Campylobacter jejuni strain ZJB021]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAACT
TTTATGGTCGTACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAATCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361