Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   G3T44_RS05790 Genome accession   NZ_CP048765
Coordinates   1113389..1114054 (-) Length   221 a.a.
NCBI ID   WP_002853205.1    Uniprot ID   Q0P933
Organism   Campylobacter jejuni strain ZJB023     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1108389..1119054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T44_RS05775 (G3T44_05770) groES 1110245..1110505 (+) 261 WP_002825273.1 co-chaperone GroES -
  G3T44_RS05780 (G3T44_05775) groL 1110526..1112163 (+) 1638 WP_002859291.1 chaperonin GroEL -
  G3T44_RS05785 (G3T44_05780) dccS 1112206..1113396 (-) 1191 WP_002866221.1 two-component system sensor histidine kinase DccS -
  G3T44_RS05790 (G3T44_05785) ciaR 1113389..1114054 (-) 666 WP_002853205.1 two-component system response regulator DccR Regulator
  G3T44_RS05795 (G3T44_05790) - 1114202..1114801 (+) 600 WP_002866222.1 bacteriohemerythrin -
  G3T44_RS05800 (G3T44_05795) - 1114812..1115051 (+) 240 Protein_1132 ribbon-helix-helix domain-containing protein -
  G3T44_RS05805 (G3T44_05800) - 1115187..1115306 (+) 120 Protein_1133 CopG family transcriptional regulator -
  G3T44_RS05815 (G3T44_05810) - 1115563..1116810 (-) 1248 WP_002853920.1 ArsS family sensor histidine kinase -
  G3T44_RS05820 (G3T44_05815) - 1116807..1117481 (-) 675 WP_002853196.1 response regulator transcription factor -
  G3T44_RS05825 (G3T44_05820) htrA 1117557..1118975 (-) 1419 WP_052789982.1 serine protease HtrA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25633.32 Da        Isoelectric Point: 4.6834

>NTDB_id=370556 G3T44_RS05790 WP_002853205.1 1113389..1114054(-) (ciaR) [Campylobacter jejuni strain ZJB023]
MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYERYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFM
TSLNTTNDLKQGFDAGCDDYIKKPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYHNNKALTLPSKEIK
LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGYCYG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=370556 G3T44_RS05790 WP_002853205.1 1113389..1114054(-) (ciaR) [Campylobacter jejuni strain ZJB023]
ATGGCTGCTAAAATTTTACTTTTAGAAGATGATTTGAGCTTGAGTGAGATCATTGAAGAGTTTTTAAACGATGAAGGATA
TGAAGTATTTTTATGCGATAATGCACAAGAAGCTTTAGATATGGCTTATGAAAGATATTTTGATCTTTGGATTTTAGATG
TAAAAGTTCCTTTAGGAGATGGATTTTCATTACTTAAAGAATTAAGAAAAAGCGGAAAGCAAACTCCAGCAATTTTCATG
ACTTCTTTAAACACAACAAACGATTTAAAACAAGGCTTTGACGCAGGTTGTGATGATTATATAAAAAAACCTTTTGAACT
TGCCGAGTTATCTATCAGGGTTAAAGCTTTGCTTAAAAGAGCTTTTTCACATAAAAATGAAGATTTTGAAGATTTAGGAG
ATGGATTTAGATTTGAATTTACTACACAAATTCTTTACCATAATAATAAAGCCTTGACTTTACCGAGTAAAGAAATTAAG
CTTTTGTCTTTATTACTTAAAAATAAAAACAACTTTTTAAGCACAGAGAGAATTTTTGAAGAACTCTGGGATTATGATGA
GGAGCCTAGTGAGCTAAGTTTAAGAGCTTATGTAAAAAATTTACGTAAAATTTTAGGAAAAGAAAAAATTATAAATCAAA
GAGGCAGGGGATATTGCTATGGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P933

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae D39

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae R6

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae TIGR4

36.364

99.548

0.362