Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G3T47_RS05465 Genome accession   NZ_CP048761
Coordinates   1035889..1036440 (+) Length   183 a.a.
NCBI ID   WP_087691968.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZS004     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1030889..1041440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T47_RS05430 (G3T47_05425) - 1031077..1031503 (+) 427 Protein_1058 GNAT family N-acetyltransferase -
  G3T47_RS05435 (G3T47_05430) - 1031567..1032188 (+) 622 Protein_1059 NAD(P)H-dependent oxidoreductase -
  G3T47_RS05440 (G3T47_05435) - 1032188..1032793 (+) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  G3T47_RS05445 (G3T47_05440) pgsA 1032918..1033454 (+) 537 WP_052793045.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  G3T47_RS05450 (G3T47_05445) rseP 1033451..1034557 (+) 1107 WP_087691969.1 RIP metalloprotease RseP -
  G3T47_RS05455 (G3T47_05450) - 1034550..1035416 (+) 867 WP_167844419.1 VirK family antimicrobial peptide resistance protein -
  G3T47_RS05460 (G3T47_05455) rpsF 1035503..1035880 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  G3T47_RS05465 (G3T47_05460) ssb 1035889..1036440 (+) 552 WP_087691968.1 single-stranded DNA-binding protein Machinery gene
  G3T47_RS05470 (G3T47_05465) rpsR 1036451..1036711 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  G3T47_RS05475 (G3T47_05470) lon 1036772..1039147 (-) 2376 WP_167844420.1 endopeptidase La -
  G3T47_RS05480 (G3T47_05475) - 1039164..1039811 (-) 648 WP_167844421.1 outer membrane protein assembly factor BamD -
  G3T47_RS05485 (G3T47_05480) fliW 1039972..1040361 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  G3T47_RS05490 (G3T47_05485) proC 1040361..1041092 (+) 732 WP_002880800.1 pyrroline-5-carboxylate reductase Machinery gene
  G3T47_RS05495 (G3T47_05490) ctsT 1041089..1041391 (+) 303 WP_002936694.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20737.63 Da        Isoelectric Point: 5.0431

>NTDB_id=370406 G3T47_RS05465 WP_087691968.1 1035889..1036440(+) (ssb) [Campylobacter jejuni strain ZS004]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDINFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=370406 G3T47_RS05465 WP_087691968.1 1035889..1036440(+) (ssb) [Campylobacter jejuni strain ZS004]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAACT
TTTATGGTCGTACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361

Multiple sequence alignment