Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   G3T48_RS05825 Genome accession   NZ_CP048760
Coordinates   1121780..1122646 (-) Length   288 a.a.
NCBI ID   WP_002852840.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZS005     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1116780..1127646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T48_RS05805 (G3T48_05805) metF 1118633..1119481 (+) 849 WP_052793735.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  G3T48_RS05810 (G3T48_05810) - 1119503..1119694 (-) 192 WP_002914249.1 membrane protein -
  G3T48_RS05815 (G3T48_05815) atpB 1119691..1120371 (-) 681 WP_052779689.1 F0F1 ATP synthase subunit A -
  G3T48_RS05820 (G3T48_05820) radA 1120440..1121780 (-) 1341 WP_167840671.1 DNA repair protein RadA Machinery gene
  G3T48_RS05825 (G3T48_05825) pilA 1121780..1122646 (-) 867 WP_002852840.1 signal recognition particle-docking protein FtsY Machinery gene
  G3T48_RS05830 (G3T48_05830) - 1122646..1123203 (-) 558 WP_002873167.1 TlpA disulfide reductase family protein -
  G3T48_RS05835 (G3T48_05835) - 1123286..1123912 (+) 627 WP_052793733.1 5-formyltetrahydrofolate cyclo-ligase -
  G3T48_RS05840 (G3T48_05840) rny 1123833..1125386 (+) 1554 WP_052793732.1 ribonuclease Y -
  G3T48_RS05845 (G3T48_05845) - 1125395..1125952 (+) 558 WP_052779687.1 DedA family protein -
  G3T48_RS05850 (G3T48_05850) - 1125952..1127211 (+) 1260 WP_002873165.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32036.03 Da        Isoelectric Point: 5.5179

>NTDB_id=370370 G3T48_RS05825 WP_002852840.1 1121780..1122646(-) (pilA) [Campylobacter jejuni strain ZS005]
MFNFFKKGLAKTLENIVGIKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=370370 G3T48_RS05825 WP_002852840.1 1121780..1122646(-) (pilA) [Campylobacter jejuni strain ZS005]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGGATTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACTAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAACTTGCTTATTTATA
TAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAACAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATCTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCCCATGAGCT
TGAAAAAATTGTGAGAATTTCAAACAAAGCTTTAGAAGGTGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATTACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTGCAAGAATTTAATGCAAGTGCTTATTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.254

100

0.434

Multiple sequence alignment