Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BvL003_RS11555 Genome accession   NZ_CP041192
Coordinates   2420359..2420694 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain BvL03     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2415359..2425694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BvL003_RS11535 (BvL003_11690) gcvT 2415969..2417069 (-) 1101 WP_094247736.1 glycine cleavage system aminomethyltransferase GcvT -
  BvL003_RS11540 (BvL003_11695) - 2417493..2419163 (+) 1671 WP_128574830.1 DEAD/DEAH box helicase -
  BvL003_RS11545 (BvL003_11700) - 2419181..2419975 (+) 795 WP_014305407.1 YqhG family protein -
  BvL003_RS11550 (BvL003_11705) sinI 2420152..2420325 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  BvL003_RS11555 (BvL003_11710) sinR 2420359..2420694 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  BvL003_RS11560 (BvL003_11715) tasA 2420742..2421527 (-) 786 WP_094247735.1 biofilm matrix protein TasA -
  BvL003_RS11565 (BvL003_11720) sipW 2421591..2422175 (-) 585 WP_012117977.1 signal peptidase I SipW -
  BvL003_RS11570 (BvL003_11725) tapA 2422147..2422818 (-) 672 WP_070082109.1 amyloid fiber anchoring/assembly protein TapA -
  BvL003_RS11575 (BvL003_11730) - 2423077..2423406 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  BvL003_RS11580 (BvL003_11735) - 2423446..2423625 (-) 180 WP_003153093.1 YqzE family protein -
  BvL003_RS11585 (BvL003_11740) comGG 2423682..2424059 (-) 378 WP_094247734.1 competence type IV pilus minor pilin ComGG Machinery gene
  BvL003_RS11590 (BvL003_11745) comGF 2424060..2424560 (-) 501 WP_227005764.1 competence type IV pilus minor pilin ComGF -
  BvL003_RS11595 (BvL003_11750) comGE 2424469..2424783 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  BvL003_RS11600 (BvL003_11755) comGD 2424767..2425204 (-) 438 WP_025852922.1 competence type IV pilus minor pilin ComGD Machinery gene
  BvL003_RS11605 (BvL003_11760) comGC 2425194..2425460 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=370370 BvL003_RS11555 WP_003153104.1 2420359..2420694(+) (sinR) [Bacillus velezensis strain BvL03]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=370370 BvL003_RS11555 WP_003153104.1 2420359..2420694(+) (sinR) [Bacillus velezensis strain BvL03]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment