Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   G3T49_RS08145 Genome accession   NZ_CP048756
Coordinates   1551597..1552370 (+) Length   257 a.a.
NCBI ID   WP_002866495.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZS006     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1546597..1557370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T49_RS08130 (G3T49_08095) - 1547446..1549380 (-) 1935 WP_167843424.1 ribonuclease R family protein -
  G3T49_RS08135 (G3T49_08100) ilvC 1549499..1550521 (+) 1023 WP_167843425.1 ketol-acid reductoisomerase -
  G3T49_RS08140 (G3T49_08105) - 1550525..1551607 (+) 1083 WP_167843426.1 divergent polysaccharide deacetylase family protein -
  G3T49_RS08145 (G3T49_08110) dprA 1551597..1552370 (+) 774 WP_002866495.1 DNA-processing protein DprA Machinery gene
  G3T49_RS08150 (G3T49_08115) dprB 1552367..1552750 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  G3T49_RS08155 (G3T49_08120) - 1552779..1553618 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  G3T49_RS08160 (G3T49_08125) msrA 1553794..1554291 (-) 498 WP_143298666.1 peptide-methionine (S)-S-oxide reductase MsrA -
  G3T49_RS08165 (G3T49_08130) ppa 1554333..1554851 (-) 519 WP_002871349.1 inorganic diphosphatase -
  G3T49_RS08170 (G3T49_08135) adk 1554861..1555439 (-) 579 WP_052794065.1 adenylate kinase -
  G3T49_RS08175 (G3T49_08140) aspS 1555436..1557187 (-) 1752 WP_167843427.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28742.58 Da        Isoelectric Point: 7.6510

>NTDB_id=370340 G3T49_RS08145 WP_002866495.1 1551597..1552370(+) (dprA) [Campylobacter jejuni strain ZS006]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=370340 G3T49_RS08145 WP_002866495.1 1551597..1552370(+) (dprA) [Campylobacter jejuni strain ZS006]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATTGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCTAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTAGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGTACAGGGACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAATTGATTTGTGATTTCAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.222

100

0.992
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment