Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BvL003_RS01785 Genome accession   NZ_CP041192
Coordinates   331040..331477 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain BvL03     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 326040..336477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BvL003_RS19815 (BvL003_01765) - 326634..326762 (-) 129 Protein_303 hypothetical protein -
  BvL003_RS01750 (BvL003_01770) - 326907..328109 (+) 1203 WP_146276088.1 GTP-binding protein -
  BvL003_RS01755 (BvL003_01775) - 328174..329310 (+) 1137 WP_146276090.1 zinc-dependent alcohol dehydrogenase -
  BvL003_RS01760 (BvL003_01780) - 329325..329759 (+) 435 WP_021494203.1 RDD family protein -
  BvL003_RS01765 (BvL003_01785) - 329877..330152 (+) 276 WP_369719109.1 YckD family protein -
  BvL003_RS20115 - 330256..330447 (+) 192 WP_071392145.1 family 1 glycosylhydrolase -
  BvL003_RS01775 (BvL003_01795) - 330372..330601 (+) 230 Protein_309 family 1 glycosylhydrolase -
  BvL003_RS01780 (BvL003_01800) nin/comJ 330620..331018 (-) 399 WP_077721770.1 competence protein ComJ Regulator
  BvL003_RS01785 (BvL003_01805) nucA/comI 331040..331477 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BvL003_RS01790 (BvL003_01810) hxlB 331836..332393 (-) 558 WP_077721772.1 6-phospho-3-hexuloisomerase -
  BvL003_RS01795 (BvL003_01815) hxlA 332390..333025 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  BvL003_RS01800 (BvL003_01820) - 333257..333619 (+) 363 WP_016936795.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=370337 BvL003_RS01785 WP_003156588.1 331040..331477(-) (nucA/comI) [Bacillus velezensis strain BvL03]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=370337 BvL003_RS01785 WP_003156588.1 331040..331477(-) (nucA/comI) [Bacillus velezensis strain BvL03]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment