Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FJ695_RS18730 Genome accession   NZ_CP041191
Coordinates   4147865..4148422 (-) Length   185 a.a.
NCBI ID   WP_141186859.1    Uniprot ID   -
Organism   Labrenzia sp. PHM005     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4142865..4153422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJ695_RS18715 (FJ695_18715) - 4143025..4143876 (-) 852 WP_141186856.1 PaaX family transcriptional regulator C-terminal domain-containing protein -
  FJ695_RS18720 (FJ695_18720) - 4144056..4145330 (+) 1275 WP_141186857.1 zinc ABC transporter substrate-binding protein -
  FJ695_RS18725 (FJ695_18725) - 4145554..4147527 (-) 1974 WP_141186858.1 murein L,D-transpeptidase -
  FJ695_RS18730 (FJ695_18730) ssb 4147865..4148422 (-) 558 WP_141186859.1 single-stranded DNA-binding protein Machinery gene
  FJ695_RS18735 (FJ695_18735) uvrA 4148884..4151808 (+) 2925 WP_141186860.1 excinuclease ABC subunit UvrA -
  FJ695_RS18740 (FJ695_18740) - 4151894..4152700 (+) 807 WP_141186861.1 sulfotransferase -
  FJ695_RS18745 (FJ695_18745) - 4153023..4153175 (+) 153 WP_141186862.1 DUF1127 domain-containing protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 18973.64 Da        Isoelectric Point: 5.2955

>NTDB_id=370329 FJ695_RS18730 WP_141186859.1 4147865..4148422(-) (ssb) [Labrenzia sp. PHM005]
MAGSVNKVILVGNLGADPEIRRTQDGRPIANLRIATSESWRDRNSGERREKTEWHRVVIFNEGLCKVAENYLRKGSKVYL
EGQLQTRKWQDQSGQDRYSTEVVLQGFNSNLTMLDGRGEGGGQPGGLPDYGNDQGGGGFGGGSSGGGGFGGGGGGGYGGG
SSGGGFGGPSGGGGGAGPMDDEIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=370329 FJ695_RS18730 WP_141186859.1 4147865..4148422(-) (ssb) [Labrenzia sp. PHM005]
ATGGCGGGAAGCGTCAACAAAGTCATTTTGGTCGGAAATCTTGGGGCGGATCCGGAAATCCGGCGCACCCAGGATGGCCG
CCCGATCGCCAACCTGCGGATCGCCACGTCTGAATCCTGGCGGGACCGCAATTCCGGCGAGCGCCGTGAAAAAACCGAAT
GGCACCGGGTGGTGATCTTCAATGAGGGCCTGTGTAAGGTCGCTGAGAATTATTTGCGCAAAGGCTCCAAGGTTTACCTG
GAAGGTCAGCTGCAGACCCGCAAGTGGCAAGACCAATCCGGTCAGGATCGATATTCTACCGAAGTCGTCCTGCAGGGTTT
CAACTCCAACTTGACGATGCTGGATGGCCGCGGCGAGGGCGGTGGTCAGCCGGGTGGTTTGCCTGATTACGGCAATGACC
AGGGCGGTGGCGGCTTTGGCGGCGGATCCTCTGGCGGCGGCGGCTTTGGTGGCGGCGGCGGTGGTGGATACGGCGGCGGC
TCGTCCGGTGGCGGCTTTGGCGGCCCGTCCGGCGGCGGCGGTGGTGCCGGCCCGATGGACGACGAAATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.15

100

0.492
  ssb Vibrio cholerae strain A1552

65.289

65.405

0.427

Multiple sequence alignment