Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G3T49_RS01690 Genome accession   NZ_CP048756
Coordinates   326150..326701 (+) Length   183 a.a.
NCBI ID   WP_002921394.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZS006     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 321150..331701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T49_RS01655 (G3T49_01635) - 321339..321764 (+) 426 WP_032585143.1 GNAT family N-acetyltransferase -
  G3T49_RS01660 - 321828..322448 (+) 621 Protein_319 NAD(P)H-dependent oxidoreductase -
  G3T49_RS01665 (G3T49_01650) - 322448..323053 (+) 606 WP_002867183.1 NAD(P)H-dependent oxidoreductase -
  G3T49_RS01670 (G3T49_01655) pgsA 323179..323715 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  G3T49_RS01675 (G3T49_01660) rseP 323712..324818 (+) 1107 WP_057095875.1 RIP metalloprotease RseP -
  G3T49_RS01680 (G3T49_01665) - 324811..325677 (+) 867 WP_057095876.1 VirK family antimicrobial peptide resistance protein -
  G3T49_RS01685 (G3T49_01670) rpsF 325764..326141 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  G3T49_RS01690 (G3T49_01675) ssb 326150..326701 (+) 552 WP_002921394.1 single-stranded DNA-binding protein Machinery gene
  G3T49_RS01695 (G3T49_01680) rpsR 326712..326972 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  G3T49_RS01700 (G3T49_01685) lon 327033..329408 (-) 2376 WP_002852988.1 endopeptidase La -
  G3T49_RS01705 (G3T49_01690) - 329425..330072 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  G3T49_RS01710 (G3T49_01695) fliW 330233..330622 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  G3T49_RS01715 (G3T49_01700) proC 330622..331356 (+) 735 WP_032582987.1 pyrroline-5-carboxylate reductase Machinery gene
  G3T49_RS01720 (G3T49_01705) ctsT 331353..331655 (+) 303 WP_032582988.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20740.63 Da        Isoelectric Point: 5.0431

>NTDB_id=370302 G3T49_RS01690 WP_002921394.1 326150..326701(+) (ssb) [Campylobacter jejuni strain ZS006]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=370302 G3T49_RS01690 WP_002921394.1 326150..326701(+) (ssb) [Campylobacter jejuni strain ZS006]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393