Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NIBR502773_RS11175 Genome accession   NZ_CP041189
Coordinates   2436163..2437530 (-) Length   455 a.a.
NCBI ID   WP_024077502.1    Uniprot ID   -
Organism   Pseudomonas sp. NIBRBAC000502773     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2431163..2442530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIBR502773_RS11150 (NIBR502773_11150) yjiA 2431498..2432457 (-) 960 WP_131699342.1 GTPase -
  NIBR502773_RS11155 (NIBR502773_11155) - 2432594..2432791 (-) 198 WP_003176208.1 YbdD/YjiX family protein -
  NIBR502773_RS11160 (NIBR502773_11160) - 2432807..2434873 (-) 2067 WP_027605316.1 carbon starvation CstA family protein -
  NIBR502773_RS11165 (NIBR502773_11165) - 2435048..2435416 (+) 369 WP_141156055.1 PilZ domain-containing protein -
  NIBR502773_RS11170 (NIBR502773_11170) - 2435421..2436146 (-) 726 WP_141156056.1 hypothetical protein -
  NIBR502773_RS11175 (NIBR502773_11175) radA 2436163..2437530 (-) 1368 WP_024077502.1 DNA repair protein RadA Machinery gene
  NIBR502773_RS11180 (NIBR502773_11180) - 2437566..2438105 (-) 540 WP_141156057.1 ankyrin repeat domain-containing protein -
  NIBR502773_RS11185 (NIBR502773_11185) katB 2438160..2439701 (-) 1542 WP_027605312.1 catalase KatB -
  NIBR502773_RS11190 (NIBR502773_11190) mscL 2439989..2440405 (+) 417 WP_115487559.1 large-conductance mechanosensitive channel protein MscL -
  NIBR502773_RS11195 (NIBR502773_11195) - 2440452..2441228 (-) 777 WP_141156058.1 ferredoxin--NADP reductase -
  NIBR502773_RS11200 (NIBR502773_11200) - 2441609..2442319 (+) 711 WP_092488504.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48819.34 Da        Isoelectric Point: 6.8987

>NTDB_id=370304 NIBR502773_RS11175 WP_024077502.1 2436163..2437530(-) (radA) [Pseudomonas sp. NIBRBAC000502773]
MAKAKRMYGCTECGATFPKWAGQCTECGAWNTLTETMIESGGASAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPPGLQVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=370304 NIBR502773_RS11175 WP_024077502.1 2436163..2437530(-) (radA) [Pseudomonas sp. NIBRBAC000502773]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAATGCACCGAGTG
TGGTGCGTGGAATACCCTGACTGAAACCATGATCGAAAGCGGCGGCGCCTCGGCCCCCACCGGCCGCGCCGGCTGGACCG
GGCAGCAGGCGCAGATCAAGACTCTGGCGGAAGTCAGCGTTGAAGAGATCCCGCGTTTCTCGACGGCCTCCGGTGAGCTG
GATCGGGTGCTGGGTGGCGGTCTGGTGGATGGTTCGGTGGTGTTGATCGGCGGTGACCCGGGCATCGGCAAATCGACGAT
TCTGCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTACGTCACCGGCGAAGAATCCCAGCAACAGGTGG
CCATGCGTGCCCGCCGTCTGGGCCTGCCCCAGGACCAACTGCGGGTCATGACCGAAACCTGCATCGAAAGCATCATTGCC
ACGGCCCGGATCGAAAAACCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAACAACTGCAATCGGCGCC
GGGCGGCGTGTCCCAGGTGCGCGAGAGTGCGGCGTTGCTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCATGTGACCAAAGAGGGCGCGCTGGCCGGGCCACGGGTGCTGGAGCATATGGTCGATACCGTGCTGTATTTCGAA
GGCGAGTCCGATGGCCGCTTGCGCTTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTGAACGAACTGGGTGTGTTCGC
CATGACCGACCGGGGGCTGAAGGAAGTCTCCAACCCCTCGGCGATTTTCCTGACCCGCGCCCAGGAAGAAGTTCCAGGCA
GCGTGGTCATGGCGACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCATCTGGCC
AACCCACGCCGCGTCACGCTGGGCCTGGATCAAAACCGCCTGGCGATGCTGTTGGCGGTGCTGCACCGTCACGGCGGCAT
CCCGACCCATGACCAGGACGTGTTCCTCAACGTGGTGGGCGGGGTCAAGGTGCTGGAAACCGCGTCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGTAACCGGCCATTGCCCCACGACCTGCTGGTATTCGGTGAAGTGGGCCTGTCGGGC
GAAGTGCGCCCGGTGCCGAGCGGTCAGGAACGCTTGAAGGAAGCGGCCAAACACGGCTTCAAACGCGCGATCGTGCCAAA
GGGCAATGCGCCGAAGGAAATGCCGCCAGGATTGCAGGTGATTGGGGTCACGCGCCTGGAACAGGCGTTGGATGCACTTT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

47.149

100

0.473
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.93

100

0.47

Multiple sequence alignment